View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10596_high_4 (Length: 404)
Name: NF10596_high_4
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 39742924 - 39743314
Alignment:
| Q |
1 |
gtccaaagtcttgatcggttaaaatccttgtattatttatataaactataattataatgtcctaacaaataacaagcatcgtgggatgaatctaacaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39742924 |
gtccaaagtcttgatcggttaaaatccttgtattatttatataaactataattataatgtcctaacaaataacaagcatcgtgggatgaatctaacaaca |
39743023 |
T |
|
| Q |
101 |
tcatctcttccatcactagaagtgttaatggaccttgagaatgagaacaatgatagtgaaaatagaatactatgggtgctgaatcctccggagccaccgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39743024 |
tcatctcttccatcactagaagtgttaatggaccttgagaatgagaacaatgatagtgaaaatagaatactatgggtgctgaatcctccggagccaccgg |
39743123 |
T |
|
| Q |
201 |
gcatgctgcaccggatcatcgaaaatatcaaccttcgaaatagattcttttctctcaaacatcaaccttcaaccaaattagtattccctttgttgcagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39743124 |
gcatgctgcaccggatcatcgaaaatatcaaccttcgaaatagattcttttctctcaaacatcaaccttcaaccaaattagtattccctttgttgcagtg |
39743223 |
T |
|
| Q |
301 |
tgtttttccaatccttaattcattcaaaaactacaatgttcaaaagtttaagtgtgatgtcttggctggtcttgtccttgcaatctctgct |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39743224 |
tgtttttccaatccttaattcattcaaaaactacaatgttcaaaagtttaagtgtgatgtcttggctggtcttgtccttgcaatctttgct |
39743314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University