View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10596_high_9 (Length: 285)
Name: NF10596_high_9
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 50236888 - 50236623
Alignment:
| Q |
1 |
aaagaactttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagttatgttcttcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50236888 |
aaagaactttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagttatgttcttcttt |
50236789 |
T |
|
| Q |
101 |
aggaacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcattgacatcattgagactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50236788 |
aggaacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcattgacatcattgagactg |
50236689 |
T |
|
| Q |
201 |
tctacagaggtgcaaggaaggggcgtggtcttgtcattgctccgaaagattactccaccaagtacc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50236688 |
tctacagaggtgcaaggaaggggcgtggtcttgtcattgctccgaaagattactccaccaagtacc |
50236623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 17278884 - 17278621
Alignment:
| Q |
1 |
aaagaactttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagttatgttcttcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
17278884 |
aaagaactttgctgtgatataccttgtggacatcacagaggtgcctgatttcaacactatgtatgagctgtacgacccttcgacagtcatgttcttcttt |
17278785 |
T |
|
| Q |
101 |
aggaacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcattgacatcattgagactg |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17278784 |
aggaacaagcacatcatgatagatcttggaactggaaacaacaacaaaatcaattgggctatgaaggacaaacaggagttcattgacatcattgaaactg |
17278685 |
T |
|
| Q |
201 |
tctacagaggtgcaaggaaggggcgtggtcttgtcattgctccgaaagattactccaccaagta |
264 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
17278684 |
tctacagaggtgcaaggaagggacgtggtctcgtcattgctcccaaagattactcaaccaagta |
17278621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 28719439 - 28719697
Alignment:
| Q |
8 |
tttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagttatgttcttctttaggaaca |
107 |
Q |
| |
|
||||| || |||||| | |||||||| |||||||||||||| |||||||| ||||||||| ||||||| || | ||| |||||||| ||||||||||||| |
|
|
| T |
28719439 |
tttgcggttatatacttggtggacattacagaggtgcctgattttaacaccatgtatgagttgtatgatccctgcacggttatgtttttctttaggaaca |
28719538 |
T |
|
| Q |
108 |
agcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcattgacatcattgagactgtctacag |
207 |
Q |
| |
|
| ||||| ||||| ||||||||||| || |||||||| ||||| ||||||||| | | |||||||| ||||||||||| ||| |||| ||||||| | |
|
|
| T |
28719539 |
aacacattatgattgaccttggaacaggtaacaacaataagattaattgggctctcagagacaaacaagagttcattgatatcgttgaaactgtcttcca |
28719638 |
T |
|
| Q |
208 |
aggtgcaaggaaggggcgtggtcttgtcattgctccgaaagattactccaccaagtacc |
266 |
Q |
| |
|
||||||||||| || |||||||||||||| |||| ||||||||||| ||||| |||| |
|
|
| T |
28719639 |
tggtgcaaggaaaggacgtggtcttgtcatctctcccaaagattactctaccaaatacc |
28719697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University