View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_low_13 (Length: 256)
Name: NF10596_low_13
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 36151413 - 36151640
Alignment:
| Q |
19 |
gtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
118 |
Q |
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| T |
36151413 |
gtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
36151512 |
T |
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| Q |
119 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggcaaggatttacc |
218 |
Q |
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| T |
36151513 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggcaaggatttacc |
36151612 |
T |
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| Q |
219 |
tgctgatgtttctgctgcagggtctgtg |
246 |
Q |
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| T |
36151613 |
tgctgatatttctgctgcagggtctgtg |
36151640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 36154799 - 36155026
Alignment:
| Q |
19 |
gtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
118 |
Q |
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| T |
36154799 |
gtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
36154898 |
T |
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| Q |
119 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggcaaggatttacc |
218 |
Q |
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| T |
36154899 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggtaaggatttacc |
36154998 |
T |
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| Q |
219 |
tgctgatgtttctgctgcagggtctgtg |
246 |
Q |
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| T |
36154999 |
tgctgatgtttctgctgcagggtctgtg |
36155026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 5273922 - 5274006
Alignment:
| Q |
17 |
cagtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctcc |
101 |
Q |
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| T |
5273922 |
cagtttacacagacaacaaactagctatatatcaggttgacaaggttcttgttcctcttgatcttgtgcttcctgctaaagctcc |
5274006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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