View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_low_16 (Length: 251)
Name: NF10596_low_16
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 43554104 - 43554339
Alignment:
| Q |
20 |
tgttaatgttgtacttgattcgaaaatagtggtcgattactt-cataaaagaagtaacgatatcaataattttggtgttgtgttgtctgcaatggtggag |
118 |
Q |
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| T |
43554104 |
tgttaatgttgtacttgattcgaaaatagtggtcgattactttcataaaagaagtaacgatatcaataattttggtgttgtgttgtctgcaatggtggag |
43554203 |
T |
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| Q |
119 |
tccctctagggcttaggtgggccaccgcatatgctacc----------nnnnnnnttataaaggaaattattaaaatatttttgactttcaaataaaatt |
208 |
Q |
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| T |
43554204 |
tccctctagggcttaggtgggccaccacatatgctaccaaaaaaatttaaaaaaattataaaggaaattattaaaatatttttgactttcaaataaaatt |
43554303 |
T |
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| Q |
209 |
acactgtgatttatgaaaatagtcttcttcatctca |
244 |
Q |
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| T |
43554304 |
acattgtgatttatgaaaatattcttcttcatctca |
43554339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 6108299 - 6108333
Alignment:
| Q |
172 |
gaaattattaaaatatttttgactttcaaataaaa |
206 |
Q |
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| T |
6108299 |
gaaattattaaaatatttttgacttttaaataaaa |
6108333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 16519695 - 16519739
Alignment:
| Q |
173 |
aaattattaaaatatttttgactttcaaataaaattacactgtga |
217 |
Q |
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| T |
16519695 |
aaattatgaaaatatctttgacttttaaataaaattacattgtga |
16519739 |
T |
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