View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10596_low_18 (Length: 247)

Name: NF10596_low_18
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10596_low_18
NF10596_low_18
[»] chr4 (9 HSPs)
chr4 (1-239)||(7451014-7451255)
chr4 (166-239)||(24627329-24627402)
chr4 (180-239)||(1604740-1604798)
chr4 (156-239)||(20327048-20327130)
chr4 (190-239)||(2895185-2895234)
chr4 (190-239)||(5599246-5599295)
chr4 (190-239)||(5908492-5908541)
chr4 (190-239)||(6735783-6735832)
chr4 (195-239)||(3329504-3329548)
[»] chr7 (8 HSPs)
chr7 (156-239)||(41572632-41572715)
chr7 (190-239)||(19802243-19802292)
chr7 (190-239)||(4340539-4340588)
chr7 (190-239)||(21959250-21959299)
chr7 (106-235)||(2934624-2934751)
chr7 (190-239)||(42786543-42786592)
chr7 (190-239)||(48477394-48477443)
chr7 (199-239)||(3737903-3737943)
[»] scaffold0158 (1 HSPs)
scaffold0158 (190-239)||(31-80)
[»] chr3 (6 HSPs)
chr3 (179-239)||(2747115-2747175)
chr3 (190-239)||(14521689-14521738)
chr3 (190-239)||(19359910-19359959)
chr3 (190-239)||(18111086-18111135)
chr3 (190-239)||(19440710-19440759)
chr3 (179-232)||(38094202-38094254)
[»] chr1 (8 HSPs)
chr1 (151-226)||(9538700-9538775)
chr1 (195-239)||(7064029-7064073)
chr1 (163-239)||(14150163-14150238)
chr1 (190-239)||(7898985-7899034)
chr1 (190-239)||(15088256-15088305)
chr1 (190-239)||(22207301-22207350)
chr1 (190-239)||(22210864-22210913)
chr1 (190-239)||(51843938-51843987)
[»] chr8 (4 HSPs)
chr8 (165-239)||(25004031-25004105)
chr8 (190-239)||(5557119-5557168)
chr8 (190-239)||(20811060-20811109)
chr8 (189-238)||(24715875-24715924)
[»] chr6 (6 HSPs)
chr6 (190-239)||(28144384-28144433)
chr6 (190-239)||(31113671-31113720)
chr6 (180-239)||(6406191-6406250)
chr6 (190-239)||(5131380-5131429)
chr6 (190-239)||(33301168-33301217)
chr6 (190-239)||(34256233-34256282)
[»] chr5 (1 HSPs)
chr5 (190-239)||(41527873-41527922)
[»] chr2 (2 HSPs)
chr2 (163-239)||(18010880-18010955)
chr2 (193-239)||(31347425-31347471)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7451014 - 7451255
Alignment:
Q  1 taagtatcgtacatctgataaaatactactgacaagtacat----acgccataactgaatactaaagtactactagcaagtacataataaatgacagatg 96  Q
    |||||||||||||| |||||||||||||||||||||| |||    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  7451014 taagtatcgtacatttgataaaatactactgacaagtgcatccatacgccataactgaatactaaagtactgctagcaagtacataataa-tgacagatg 7451112  T
Q  97 acaaatattatactagtaccagacaatgcaaacataatttattcaacttccatttgttcacccttctcacgagcaacctacgtatctgaaaagaaataaa 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  7451113 acaaatattatactagtaccagacaatgtaaacataatttattcaacttccttctgttcacccttctcacgagcaacctacgtatctgaaaagaaataaa 7451212  T
Q  197 aaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7451213 aaggattggggtgagacataaggtctcagtaagttccacctat 7451255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 24627329 - 24627402
Alignment:
Q  166 cgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||| ||||| | ||||||||  ||||||||||||||||||||| |||| | |||||||  ||||||||||||    
T  24627329 cgagccacctatgcatctgaaataaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctat 24627402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 1604798 - 1604740
Alignment:
Q  180 atctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||| |||||||  ||||||||||||||||  |||||||||| ||||||||||||    
T  1604798 atctgaaaataaataaag-ggattggggtgagacaggaggtctcagtgagttccacctat 1604740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 20327130 - 20327048
Alignment:
Q  156 acccttctcacgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||| |||| ||||| || |||||||||||||||| | ||||  |  ||||||||||||||||||| | ||||||||||    
T  20327130 acccttctcgcgagaaacctgcgaatctgaaaagaaataaca-ggataagaatgagacataaggtctcagtgacttccacctat 20327048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 2895234 - 2895185
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  2895234 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctat 2895185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 5599246 - 5599295
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||||||||||||||||||  | |||||||| ||||||| ||||    
T  5599246 aaataaaaaggattggggtgagacaagatgtctcagtgagttccatctat 5599295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 5908492 - 5908541
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  5908492 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctat 5908541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 6735832 - 6735783
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| |||||||| |||||||| | |||||||| ||||||||||||    
T  6735832 aaataaaatggattgggatgagacatgatgtctcagtgagttccacctat 6735783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 3329548 - 3329504
Alignment:
Q  195 aaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||||||  | |||||||| ||||||||||||    
T  3329548 aaaaggattggggtgagacaagatgtctcagtgagttccacctat 3329504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 41572715 - 41572632
Alignment:
Q  156 acccttctcacgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||| | |||||||   ||||||||||||||  ||| |||||||| ||||||||||||| ||||| ||||||||||||    
T  41572715 acccttctcatgcgcaacctgtttatctgaaaagaaaataaatggattgggatgagacataaggtatcagtgagttccacctat 41572632  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 19802243 - 19802292
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  19802243 aaataaaaaggattggggtgagacaaaatgtctcagtgagttccacctat 19802292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 4340539 - 4340588
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||| ||||||||||||||| || |||||||| ||||||||||||    
T  4340539 aaataaaaatgattggggtgagacaaaatgtctcagtgagttccacctat 4340588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 21959299 - 21959250
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| |||||||||||||||| || |||||||| ||||||||||||    
T  21959299 aaataaaatggattggggtgagacaaaatgtctcagtgagttccacctat 21959250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 2934624 - 2934751
Alignment:
Q  106 atactagtaccagacaatgcaaacataatttattcaacttccatttgttcacccttctcacgagcaacctacgtatctgaaaagaaataaaaaggattgg 205  Q
    |||||| || |||||||||||| ||||| | ||||| ||||| | |  | ||||||| | |||| ||| | ||||||||||||||||  ||| |||||||    
T  2934624 atactaatatcagacaatgcaa-cataaataattcagcttccttctacttacccttcccgcgagtaacatgcgtatctgaaaagaaa-gaaagggattgg 2934721  T
Q  206 ggtgagacataaggtctcagtaagttccac 235  Q
    |  ||||||||| |||||||| ||||||||    
T  2934722 gacgagacataatgtctcagtgagttccac 2934751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 42786592 - 42786543
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  42786592 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctat 42786543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 48477394 - 48477443
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  48477394 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctat 48477443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 3737943 - 3737903
Alignment:
Q  199 ggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||| | |||||||| ||||||||||||    
T  3737943 ggattggggtgagacatgatgtctcagtgagttccacctat 3737903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 80 - 31
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  80 aaataaaaaggattggggtgagacaaaatgtctcagtgagttccacctat 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 2747175 - 2747115
Alignment:
Q  179 tatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||| |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  2747175 tatctgaaaataaataaaagggattggggtgagacaggatgtctcagtgagttccacctat 2747115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 14521738 - 14521689
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||||||||    
T  14521738 aaataaaaaggattggggtgagacaaaatgtcttagtgagttccacctat 14521689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 19359959 - 19359910
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||| |||||||||||||| || |||||||| ||||||||||||    
T  19359959 aaataaaaagaattggggtgagacaaaatgtctcagtgagttccacctat 19359910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 18111086 - 18111135
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| |||| |||||||||||| | |||||||| ||||||||||||    
T  18111086 aaataaaagggatcggggtgagacatgatgtctcagtgagttccacctat 18111135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 19440710 - 19440759
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| |||||| |||||||||| | |||||||| ||||||||||||    
T  19440710 aaataaaagggattgaggtgagacatgatgtctcagtgagttccacctat 19440759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 38094254 - 38094202
Alignment:
Q  179 tatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttc 232  Q
    ||||||||||||||| |||||||||| | |||||||||| |||||||| |||||    
T  38094254 tatctgaaaagaaat-aaaaggattgagatgagacataatgtctcagtgagttc 38094202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 9538700 - 9538775
Alignment:
Q  151 tgttcacccttctcacgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagt 226  Q
    |||| |||||| |||| | |||||||||||||||||||  ||||||||| ||||||||| |||| || ||||||||    
T  9538700 tgtttacccttatcacaaacaacctacgtatctgaaaaagaataaaaagaattggggtgtgacacaatgtctcagt 9538775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 7064029 - 7064073
Alignment:
Q  195 aaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  7064029 aaaaggattagggtgagacataatgtctcagtgagttccacctat 7064073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 14150238 - 14150163
Alignment:
Q  163 tcacgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||| |||||| | |||||||||  |||||||| ||||||||||||||||| | ||||| || ||||||||||||    
T  14150238 tcacgatcaacctgcttatctgaaataaaataaaa-ggattggggtgagacatgatgtctcggtgagttccacctat 14150163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 7898985 - 7899034
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  7898985 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctat 7899034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 15088256 - 15088305
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  15088256 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctat 15088305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 22207301 - 22207350
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  22207301 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctat 22207350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 22210864 - 22210913
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  22210864 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctat 22210913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 51843938 - 51843987
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||  ||||||||||||||| | |||||||| ||||||||||||    
T  51843938 aaataaaaataattggggtgagacatgatgtctcagtgagttccacctat 51843987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 25004105 - 25004031
Alignment:
Q  165 acgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||  |||||||||  |||  ||| |||||||||||||||| || |||||||| ||||||||||||    
T  25004105 acgagcaacctatatatctgaaataaaaataaagggattggggtgagacagaatgtctcagtgagttccacctat 25004031  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 5557119 - 5557168
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||| |||||||||||||| || |||||||| ||||||||||||    
T  5557119 aaataaaaagaattggggtgagacaaaatgtctcagtgagttccacctat 5557168  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 20811109 - 20811060
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||| ||| |||||||||||||||| || |||||||| ||||||||||||    
T  20811109 aaatgaaagggattggggtgagacagaatgtctcagtgagttccacctat 20811060  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 24715924 - 24715875
Alignment:
Q  189 gaaataaaaaggattggggtgagacataaggtctcagtaagttccaccta 238  Q
    |||| ||||||||||||| |||||||||| |||||||| ||||| |||||    
T  24715924 gaaacaaaaaggattgggatgagacataaagtctcagtgagttctaccta 24715875  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 28144384 - 28144433
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||| ||||||| || |||||||| ||||||||||||    
T  28144384 aaataaaaaggattgggctgagacaaaatgtctcagtgagttccacctat 28144433  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 31113720 - 31113671
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||| | |||||||| ||||||||||||    
T  31113720 aaataaaagggattggggtgagacatgatgtctcagtgagttccacctat 31113671  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 6406191 - 6406250
Alignment:
Q  180 atctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||  |||||||| ||||||||||||||||| | |||||||| |||| |||||||    
T  6406191 atctgaaataaaataaaagggattggggtgagacatgatgtctcagtgagttgcacctat 6406250  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 5131429 - 5131380
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||| ||||||||||||||||  | |||||||| ||||||||||||    
T  5131429 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctat 5131380  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 33301217 - 33301168
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||||||||||||||||||  | |||||||| ||||||| ||||    
T  33301217 aaataaaaaggattggggtgagacaagatgtctcagtgagttccatctat 33301168  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 34256282 - 34256233
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||| |||||||||||||| || | |||||| ||||||||||||    
T  34256282 aaataaaaagaattggggtgagacaaaatgcctcagtgagttccacctat 34256233  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 41527873 - 41527922
Alignment:
Q  190 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||| |||||||||||||| || |||||||| ||||||||||||    
T  41527873 aaataaaaagaattggggtgagacaaaatgtctcagtgagttccacctat 41527922  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 18010880 - 18010955
Alignment:
Q  163 tcacgagcaacctacgtatctgaaaagaaataaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    |||||||||||||   ||||||||| ||||||||  ||||||||||||||||  | |||||||| ||||||||||||    
T  18010880 tcacgagcaacctgtttatctgaaatgaaataaag-ggattggggtgagacaggatgtctcagtgagttccacctat 18010955  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 31347471 - 31347425
Alignment:
Q  193 taaaaaggattggggtgagacataaggtctcagtaagttccacctat 239  Q
    ||||||||||||||||||||||  | |||||||| ||||||||||||    
T  31347471 taaaaaggattggggtgagacaggatgtctcagtgagttccacctat 31347425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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