View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_low_22 (Length: 240)
Name: NF10596_low_22
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26816513 - 26816288
Alignment:
| Q |
1 |
gtaaataacattgtttaattttaaggaacctaaagtgccaaccgccacccaggtgagctcttgtaagnnnnnnnnnn-tgaaattgttgtttaattgttc |
99 |
Q |
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| T |
26816513 |
gtaaataacattgtttaattttaaggaacccaacgtgccaaccgtcacccaggtgagctcttgtaagaagaaaaaaaatgaaattgttgtttaattgttc |
26816414 |
T |
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| Q |
100 |
tatatatttaaaaacttaataaatagctcaattgaacaaaagttgagtttagattatccatagagtttgattaccgtgaacttgtgttgcaattataatc |
199 |
Q |
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| T |
26816413 |
tatatatttaaaaacttaataaatagctcaattgaacaaaagttgagtttagattatccatagagtttgattaccgtgaacttgttttgcaattataatc |
26816314 |
T |
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| Q |
200 |
ttgacgaagttactaaatttgtttct |
225 |
Q |
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| T |
26816313 |
ttgacgaagttactaaatttgtttct |
26816288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 26789511 - 26789472
Alignment:
| Q |
134 |
aacaaaagttgagtttagattatccatagagtttgattac |
173 |
Q |
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| T |
26789511 |
aacaaaagttgagtttaaattatccatagagtttgattac |
26789472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 26783154 - 26783089
Alignment:
| Q |
161 |
agagtttgattaccgtgaacttgtgttgcaattataatcttgacgaagttact-aaatttgtttct |
225 |
Q |
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| T |
26783154 |
agagtttgattacaatgaactttgtttgcaattagaatcttgatgaagttactcaaatttgtttct |
26783089 |
T |
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