View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_low_5 (Length: 392)
Name: NF10596_low_5
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_low_5 |
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| [»] scaffold0166 (2 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 32629 - 32253
Alignment:
| Q |
1 |
acgaaatcaaacttggaccaatccgcaggatcatcaagaatcttgttgatttcaaagcaatgaacatcaagaatcatcaacaaattatcgaacctgaaan |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629 |
acgaaatcaaacttggaccaatccgcaggatcatcaagaatcttgttgatttcaaagcaatgaacatcaagaatcatcaacaaattatcgaacctgaaat |
32530 |
T |
|
| Q |
101 |
nnnnnncaaagcaaaattaagatcgaaattacactattgaattgattagggataaaatcagtgtttaaaaagatgaatagttaattacctaaactgatta |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32529 |
ttttttcaaagcacaattaagatcgaaattacactattgaattgattagggataaaatcagtgtttaaaaagatgaatagttaattacctaaactgatta |
32430 |
T |
|
| Q |
201 |
gggatgtttcgaatcattacagtggtaatgtgtaatgcttcagcttcttcaatagtttttggaaatggaataacagttccaacacgatgatgagtacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32429 |
gggatgtttcgaatcattacagtggtaatgtgtaatgcttcagcttcttcaatagtttttggaaatggaataacagttccaacacgatgatgagtacttt |
32330 |
T |
|
| Q |
301 |
tggtagttttctggtgaatccaagttcgttttggtacataaaccattcttgattgagttttagggttttgtggaaaa |
377 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32329 |
tggtagttttctgctgaatccgagttcgttttggtacataaatcattcttgattgagttttagggttttgtggaaaa |
32253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 41 - 358
Target Start/End: Original strand, 22286 - 22594
Alignment:
| Q |
41 |
tcttgttgatttcaaagcaatgaacatcaagaatcatcaacaaattatcgaacctgaaannnnnnncaaagcaaaattaagatcgaaattacactattga |
140 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||| ||| | |
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| T |
22286 |
tcttgttgatttcaaagcaatgatcatcaagtatcttcaacaaattatcaaacctgaaattttt--caaaacaaaattgagatcaaaattaccctaaaaa |
22383 |
T |
|
| Q |
141 |
attgattagggataaaatcagtgtttaaaaagatgaatagttaattacctaaactgattagggatgtttcgaatcattacagtggtaatgtgtaatgctt |
240 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22384 |
c-------gggataaaatcacagtttaaaaagatgaatagttaattacctaaactgattagggatatttcgaatcattacagtggtaatgtgtaatgctt |
22476 |
T |
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| Q |
241 |
cagcttcttcaatagtttttggaaatggaataacagttccaacacgatgatgagtacttttggtagttttctggtgaatccaagttcgttttggtacata |
340 |
Q |
| |
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||||||||||||| ||||| |||||||| ||| |||| |||||||||||| ||||||||| |||||||||| |||||| ||||||||| | |||| |
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| T |
22477 |
cagcttcttcaattgttttcggaaatggtatagaagtttcaacacgatgataagtacttttactagttttctgctgaatctgagttcgtttgcgatcata |
22576 |
T |
|
| Q |
341 |
aaccattcttgattgagt |
358 |
Q |
| |
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|||||| ||||||||||| |
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| T |
22577 |
aaccatccttgattgagt |
22594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 24790246 - 24789870
Alignment:
| Q |
1 |
acgaaatcaaacttggaccaatccgcaggatcatcaagaatcttgttgatttcaaagcaatgaacatcaagaatcatcaacaaattatcgaacctgaaan |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790246 |
acgaaatcaaacttggaccaatccgcaggatcatcaagaatcttgttgatttcaaagcaatgaacatcaagaatcatcaacaaattatcgaacctgaaat |
24790147 |
T |
|
| Q |
101 |
nnnnnncaaagcaaaattaagatcgaaattacactattgaattgattagggataaaatcagtgtttaaaaagatgaatagttaattacctaaactgatta |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790146 |
ttttttcaaagcacaattaagatcgaaattacactattgaattgattagggataaaatcagtgtttaaaaagatgaatagttaattacctaaactgatta |
24790047 |
T |
|
| Q |
201 |
gggatgtttcgaatcattacagtggtaatgtgtaatgcttcagcttcttcaatagtttttggaaatggaataacagttccaacacgatgatgagtacttt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790046 |
gggatgtttcgaatcattacagtggtaatgtgtaatgcttcagcttcttcaatagtttttggaaatggaataacagttccaacacgatgatgagtacttt |
24789947 |
T |
|
| Q |
301 |
tggtagttttctggtgaatccaagttcgttttggtacataaaccattcttgattgagttttagggttttgtggaaaa |
377 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24789946 |
tggtagttttctgctgaatccgagttcgttttggtacataaatcattcttgattgagttttagggttttgtggaaaa |
24789870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 41 - 358
Target Start/End: Original strand, 24779903 - 24780211
Alignment:
| Q |
41 |
tcttgttgatttcaaagcaatgaacatcaagaatcatcaacaaattatcgaacctgaaannnnnnncaaagcaaaattaagatcgaaattacactattga |
140 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||| ||| | |
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| T |
24779903 |
tcttgttgatttcaaagcaatgatcatcaagtatcttcaacaaattatcaaacctgaaattttt--caaaacaaaattgagatcaaaattaccctaaaaa |
24780000 |
T |
|
| Q |
141 |
attgattagggataaaatcagtgtttaaaaagatgaatagttaattacctaaactgattagggatgtttcgaatcattacagtggtaatgtgtaatgctt |
240 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24780001 |
c-------gggataaaatcacagtttaaaaagatgaatagttaattacctaaactgattagggatatttcgaatcattacagtggtaatgtgtaatgctt |
24780093 |
T |
|
| Q |
241 |
cagcttcttcaatagtttttggaaatggaataacagttccaacacgatgatgagtacttttggtagttttctggtgaatccaagttcgttttggtacata |
340 |
Q |
| |
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||||||||||||| ||||| |||||||| ||| |||| |||||||||||| ||||||||| |||||||||| |||||| ||||||||| | |||| |
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| T |
24780094 |
cagcttcttcaattgttttcggaaatggtatagaagtttcaacacgatgataagtacttttactagttttctgctgaatctgagttcgtttgcgatcata |
24780193 |
T |
|
| Q |
341 |
aaccattcttgattgagt |
358 |
Q |
| |
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|||||| ||||||||||| |
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|
| T |
24780194 |
aaccatccttgattgagt |
24780211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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