View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_low_7 (Length: 309)
Name: NF10596_low_7
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 26890933 - 26891226
Alignment:
| Q |
1 |
atctctttctggtatgatgatgtgaatgaatgccttttcaccctggacacacgaggctcgactgtttggtgtcccaattcattgacatatatggtgggaa |
100 |
Q |
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| T |
26890933 |
atctctttctggtatgataatgtgaatgaatgccttttcaccctggacacaagaggctcgactgtttggtgtcccaattcattgacatatatggtgggaa |
26891032 |
T |
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| Q |
101 |
gatgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaa |
200 |
Q |
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| T |
26891033 |
gatgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaa |
26891132 |
T |
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| Q |
201 |
atatcataattgaatgtttatgttaagaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgt |
294 |
Q |
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| T |
26891133 |
atatcataattgaatgtttgtgttaagaaaaatgctatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgt |
26891226 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 5078646 - 5078720
Alignment:
| Q |
65 |
tttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaa |
139 |
Q |
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| T |
5078646 |
tttggtgtcccaattcattgacttctatggtgggaagacatctcaattgtaagtttttaggtgtaaatatcacaa |
5078720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 12072659 - 12072717
Alignment:
| Q |
226 |
agaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttg |
284 |
Q |
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| T |
12072659 |
agaaaaatgctatttctcgcgacagtttccttcccgagagtgacccgaatgacatgttg |
12072717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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