View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10597_low_1 (Length: 415)
Name: NF10597_low_1
Description: NF10597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10597_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 18656073 - 18656202
Alignment:
| Q |
271 |
ttatccatgtcaaacctatgtttactacaaagcaacaccaccaaattacctcgatttagctaccatttcagaccttttccaacttagtcgtttaatgatc |
370 |
Q |
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| T |
18656073 |
ttatccatgtcaaacctatgtttactacaaagcaacaccaccaaattacctcgatttagctaccatttcagaccttttccaacttagtcgtttaatgatc |
18656172 |
T |
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| Q |
371 |
tcaaaaccaagcaatatctcttcaccttct |
400 |
Q |
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| T |
18656173 |
tcaaaaccaagcaatatctcttcaccttct |
18656202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 18655938 - 18656002
Alignment:
| Q |
139 |
tctccaaccccatcaccaccaattatcaaccttcatcttcatcctactcttccctttccataaat |
203 |
Q |
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| T |
18655938 |
tctcaaaccccatcaccaccaattatcaaccttcatcttcatcctactcttccctttccttaaat |
18656002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 18655809 - 18655848
Alignment:
| Q |
16 |
gaaccttgactagtcagatctcaaagccgactcatccccc |
55 |
Q |
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| T |
18655809 |
gaacattgactagtcagatctcaaagccgactcatccccc |
18655848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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