View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10597_low_4 (Length: 268)
Name: NF10597_low_4
Description: NF10597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10597_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 39424686 - 39424942
Alignment:
| Q |
6 |
actaagctttgctgtgtgatggattttcaaagccgtttttcggatgaatttgcagcctttcccaatttgatcaaggcaaggattactgaattctatattc |
105 |
Q |
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| T |
39424686 |
actaagctttgctgtgtgatggatttccaaagccgtttttcggatgaatttgcagcctttcccaatttgatcaaggcaaggattactgaattctatattc |
39424785 |
T |
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| Q |
106 |
cacttagtatggtttgtaaggcaaagacgctacatattgaagtggtatgaatatcgtcgtcctaactcctaaataaacgtttaatgaaattttgattttc |
205 |
Q |
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| T |
39424786 |
cacttagtatggtttgtaaggcaaagacgctacatattgaagtggtatgaatatcgtcgtcctaactcctaaataaacgtttaatttaattttgattttc |
39424885 |
T |
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| Q |
206 |
ttactatacatacatatc----taatgttgtgtcttgtgtgactcatgaagcctatg |
258 |
Q |
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| T |
39424886 |
ttactatacatacatatctaattaatgttgtgtcttgtgtgactcatgaagcctatg |
39424942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 39457506 - 39457307
Alignment:
| Q |
59 |
agcctttcccaatttgatcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattgaa---gtggtatga |
155 |
Q |
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| T |
39457506 |
agccttacccagtttgatcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatga |
39457407 |
T |
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| Q |
156 |
atatcgtc--gtcctaactcctaaataaac----gtttaatgaaattttgattttcttactatacatacatatctaatgttgtgtcttgtgtgactcatg |
249 |
Q |
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| T |
39457406 |
atatcatatggtcctaactcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatg |
39457307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 39437781 - 39437912
Alignment:
| Q |
75 |
atcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattg---aagtggtatgaatatcgtcgtcctaac |
171 |
Q |
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| T |
39437781 |
atcaaggcaaggattagtgaattctttgttccacttagtatggtttgtaaagcagagaacttacgtatagaaaaagtggtatgtatatcgtggtgctaac |
39437880 |
T |
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| Q |
172 |
tcctaaataaacgtttaatgaaattttgattt |
203 |
Q |
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| T |
39437881 |
tcctaaataaacctttaataaaattgtgattt |
39437912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 39463018 - 39462936
Alignment:
| Q |
69 |
aatttgatcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattgaagtggta |
152 |
Q |
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| T |
39463018 |
aatttgatcaaggcaagggttaatgaattgtatat-ccacttagtatggtttgtaaggcagagaccctatgttttgaagtggta |
39462936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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