View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10597_low_5 (Length: 250)
Name: NF10597_low_5
Description: NF10597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10597_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 21586196 - 21586350
Alignment:
| Q |
87 |
ataaatatttcaagacaactataataacattaatagtaagagaatataaatggatgtatttaattggatacaacttaagtttggggcaccctcccaccat |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21586196 |
ataaatatttcaagacaactataataacattaatagtaagagaatataaatggatgtatttaattggatacaacttaagtttggggcaccctcccaccat |
21586295 |
T |
|
| Q |
187 |
tatttaaatcaaaacaactttcaccccaatttatcttgaatgcataatcctatgctac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21586296 |
tatttaaatcaaaacaactttcaccccaat---tcttgaatgcataatcctatgctac |
21586350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 21593404 - 21593572
Alignment:
| Q |
73 |
tatcataacaagaaataaatatttcaa-gacaactataataacattaatagtaagagaatataaatggatgtatttaattggatacaacttaagtttggg |
171 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| | ||| ||||||||| |||||||| | || ||| |
|
|
| T |
21593404 |
tatcataacaagaaataaataattcaaagacaactatagtaacattaatagtaagagaatataatttgatttatttaattagatacaac-tctgtgaggg |
21593502 |
T |
|
| Q |
172 |
gcaccctcccaccattatttaaatcaaaacaactttcaccccaatttatcttgaatgcataatcctatgctac |
244 |
Q |
| |
|
| |||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
21593503 |
gtaccctctcaccattatttaattcaaaacaactttcaccccaat---tcttgaatgcgtaatcctatgctac |
21593572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University