View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10598_high_2 (Length: 319)
Name: NF10598_high_2
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10598_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 41036532 - 41036822
Alignment:
| Q |
10 |
agatgaaaagggaatgcagaaaatagtggaagtggtgatgatgtgtgtaaattgggattaaacattttcctcacttcaatctagtcatggactttctaat |
109 |
Q |
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| T |
41036532 |
agatgaaaagggaatgcagaaaatagtggaagtggtgatgatgtgtgtaaattgggattaaccattttcctcacttcaatctagtcatggaatttctaat |
41036631 |
T |
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| Q |
110 |
taccacaactgactccggaaaaagaaaagattattagtactttccatgatagggatgagtactagatatagagcactaagcagcaaaacagtcaagaaat |
209 |
Q |
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| T |
41036632 |
taccacaactgactccggaaaaagaaaagattattagtactttccatgatagggatgagtactagatatagagcactaagcagcaaaacagtcaagaaat |
41036731 |
T |
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| Q |
210 |
tagagccaacactcgtcaattttaatannnnnnnnnctaatactttggtactgatgatgatggccagtgggaaaagttaggttaggtcttca |
301 |
Q |
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| T |
41036732 |
tagagccaacactcgtcaattttaata-ttttttttctaatactttggtactgatgatgatggccagtgggaaaagttaggttaggtcttca |
41036822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 41046460 - 41046575
Alignment:
| Q |
72 |
cattttcctcacttcaatctagtcatggactttctaattaccacaactgactccggaaaaagaaaagattattagtactttccatgatagggatgagtac |
171 |
Q |
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||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| | || | |||||||||||||||||| |||| |
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| T |
41046460 |
cattttcttcaattcaatctagtcatggactttcttattaccacaactgactccaaaaatagaaaagactggtacttctttccatgatagggatgggtac |
41046559 |
T |
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| Q |
172 |
tagatatagagcacta |
187 |
Q |
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| T |
41046560 |
caaatatagagcacta |
41046575 |
T |
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