View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10598_low_1 (Length: 390)
Name: NF10598_low_1
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10598_low_1 |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: scaffold1683 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 245 - 609
Alignment:
| Q |
17 |
ttttctacatctaggatatacaaaaattgaggaagatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagtt |
116 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
245 |
ttttctacatctaggatatacaaaaactaaggaagatggtctataccacttccccatttctatgagtgttgcaaaacacactactgttacatcactagtt |
344 |
T |
|
| Q |
117 |
actattaatgtcatcatacagttatgatttgttttctcttggtgttcccattaataaaatggttggataatcgtttttgaactgaataatacaaaatgct |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
345 |
actattaatgtcatcatacagttatgatttgatttctcttggtgttcccgttaataaaatggttggacaatcgtttttgaactgaataatacaaaatgct |
444 |
T |
|
| Q |
217 |
tatttgtgaagctc-ggctctttttatatgttcccactaatatcttttaatgtatagactctgatactatcttaaattttagactttaaaagttaaacct |
315 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
445 |
catttgtgaagctcaggctctttt--tatgttcccactaatatcttttaatgtatagactctgatactatcttaaattttagactttaaaagttaaactt |
542 |
T |
|
| Q |
316 |
caaaagttagtgttagaggtgaggattaaagtctagacaaagtgaatccttacaataatttcatctc |
382 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
543 |
caaaagttagtctgagaggtgaggattaaagtctagacaaagtgaatccttacaataatttcgtctc |
609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 41527557 - 41527948
Alignment:
| Q |
17 |
ttttctacatctaggatatacaaaaattgaggaagatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41527557 |
ttttctacatctaggatatacaaaaattgaggaagatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagtt |
41527656 |
T |
|
| Q |
117 |
actattaatgtcatcatacagttatgatttgttttctcttggtgttcccattaataaaatggttggataatcgtttttgaac-------tgaataataca |
209 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||| |
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| T |
41527657 |
actattaatgtcatcattcagttatgatttgttttctcttggtgttcccgttaataaaatgtatggacaatcgtttttgaactcaatgttgaataataca |
41527756 |
T |
|
| Q |
210 |
aaatgcttatttgtgaagctcggctctttttatatgttcccactaatatcttttaatgtatagactctgatactatcttaaattttagactttaaaagtt |
309 |
Q |
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||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41527757 |
aaatgctcatttgtgaagctc-aatctctttttatgttcccactaatatcttttaatgtatagactctgatactatcttaaattttagactttaaaagtt |
41527855 |
T |
|
| Q |
310 |
aaacctcaaaagttagt-gtt-------------------agaggtgaggattaaagtctagacaaagtgaatccttacaataatttcatctc |
382 |
Q |
| |
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||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41527856 |
aaagatcaaaagttagtagttaaatctcaaaagttagccgagaggtgaggattaaagtctagacaaagtgaatccttacaataatttcgtctc |
41527948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 51 - 318
Target Start/End: Complemental strand, 39890148 - 39889865
Alignment:
| Q |
51 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgttt |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
39890148 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactaataatgtcatcatacagttttgatttgttt |
39890049 |
T |
|
| Q |
151 |
tctcttggtgttcccattaataaaatggttggataatcgtttttgaac-------tgaataatacaaaatgcttatttgtg-------aag-ctcggctc |
235 |
Q |
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||||||||||||| ||||||||||||| |||| |||||||| ||||| |||||||||||||||||| ||||||| ||| | | ||| |
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| T |
39890048 |
tctcttggtgttctcattaataaaatgtatggacaatcgtttgtgaactcagtgttgaataatacaaaatgctcatttgtggcatgtaaagtttagactc |
39889949 |
T |
|
| Q |
236 |
tttttatatgttcccactaatatcttttaatgtatagactctgatactatcttaaattttagactttaaa---agttaaacctcaa |
318 |
Q |
| |
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|||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39889948 |
tttt--aatgtttccgttaatatcttttaatgtatagactccgatactatcttaaattttagactttaaaattagttaaacctcaa |
39889865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 39882629 - 39882503
Alignment:
| Q |
51 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgttt |
150 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| || |||||||||| |
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| T |
39882629 |
gatggtctgtaccactttatcatttctatgagtgctgcacaacacactactgttacatccctagttactaataatatcatcatacaattttgatttgttt |
39882530 |
T |
|
| Q |
151 |
tctcttggtgttcccattaataaaatg |
177 |
Q |
| |
|
||| || ||||||| ||||||||||| |
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| T |
39882529 |
tcttttagtgttccggttaataaaatg |
39882503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 39897615 - 39897486
Alignment:
| Q |
51 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttac---tattaatgtcatcatacagttatgatttg |
147 |
Q |
| |
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|||||||| |||||||||||||||| ||||| ||||||| ||||||||| ||||| |||| | |||| || || ||| ||||||||||| || |||| |
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| T |
39897615 |
gatggtctttaccacttcaccatttatatgaatgctgcaaaacacactaatgttatatcatttattacctgtaatagtgtaatcatacagttctggtttg |
39897516 |
T |
|
| Q |
148 |
ttttctcttggtgttcccattaataaaatg |
177 |
Q |
| |
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||||||||| | ||| || ||||||||||| |
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| T |
39897515 |
ttttctcttagcgtttccgttaataaaatg |
39897486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 40096613 - 40096710
Alignment:
| Q |
269 |
atagactctgatactatcttaaattttagactttaaa---agttaaacctcaaaagttagtgttagaggtgaggattaaagtctagacaaagtgaatc |
363 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| || || |||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |
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|
| T |
40096613 |
atagactctaataccatcttaaattttagactttcaaactagctaaacctcaaaagttagtccaagacatgaggattaaagtctagacaatgtgaatc |
40096710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 39882414 - 39882301
Alignment:
| Q |
253 |
taatatcttttaatgtataga-ctctgatactatcttaaattttagactttaaa---agttaaacctcaaaagttagtgttagaggtgaggattaaagtc |
348 |
Q |
| |
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||||||||||||||||||||| || | ||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||| | | |||| |
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| T |
39882414 |
taatatcttttaatgtatagaactat-atactatcttaaaatttagactttaaagctagctaaacctcaaaagttagttgaagaggtgagtactcaagtg |
39882316 |
T |
|
| Q |
349 |
tagacaaagtgaatc |
363 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
39882315 |
tagacaatgtgaatc |
39882301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 39897373 - 39897288
Alignment:
| Q |
269 |
atagactctgatactatcttaaattttagactttaaa---agttaaacctcaaaagttagtgttagaggtgaggattaaagtctagac |
353 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39897373 |
atagactctgataccatcttaaaatttagactttaaagttagctaaacctc--aagttagttcaagaggtgaggattaaagtctagac |
39897288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 39889485 - 39889439
Alignment:
| Q |
317 |
aaaagttagtgttagaggtgaggattaaagtctagacaaagtgaatc |
363 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39889485 |
aaaagttagtccgagaggtgaggattaaagtctagacaaagtaaatc |
39889439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 39890204 - 39890168
Alignment:
| Q |
17 |
ttttctacatctaggatatacaaaaattgaggaagat |
53 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||| |
|
|
| T |
39890204 |
ttttctacatctaggatacaccaaaattgaggaagat |
39890168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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