View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10598_low_15 (Length: 228)
Name: NF10598_low_15
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10598_low_15 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 45266151 - 45266255
Alignment:
| Q |
16 |
atgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaaatttctgtttatgt |
115 |
Q |
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| T |
45266151 |
atgaacctaaattgaagaaggtaaattggaattctcccatgaagaaagttggtacaaaaaatggtcaaatttatttgagcatgacaagttctgcttatgt |
45266250 |
T |
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| Q |
116 |
ttgaa |
120 |
Q |
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||||| |
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| T |
45266251 |
ttgaa |
45266255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 21530855 - 21530959
Alignment:
| Q |
16 |
atgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaaatttctgtttatgt |
115 |
Q |
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||||||||||| || ||||| |||||||||||| || ||| || |||||| ||||||||||||||| | |||||||||||||| ||||| | |||||| |
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| T |
21530855 |
atgaacctaaattgaagaagataaattggaattctcccatgaagaaagttggcacaaaaaatggtcaaatttatttgagcatgacaattttcgcttatgt |
21530954 |
T |
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| Q |
116 |
ttgaa |
120 |
Q |
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||||| |
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| T |
21530955 |
ttgaa |
21530959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 22907236 - 22907132
Alignment:
| Q |
16 |
atgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaaatttctgtttatgt |
115 |
Q |
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||||||||||| || ||||| ||| |||||||| || ||| || |||||| ||||||||||||| | | |||||||||||||| ||||| || |||||| |
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| T |
22907236 |
atgaacctaaattgaagaagataagttggaattctcccatgaagaaagttggcacaaaaaatggttaaatttatttgagcatgacaatttttgcttatgt |
22907137 |
T |
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| Q |
116 |
ttgaa |
120 |
Q |
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||||| |
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| T |
22907136 |
ttgaa |
22907132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 38128806 - 38128770
Alignment:
| Q |
174 |
tgaagatggtcctaatgctaagttggatggagtaaat |
210 |
Q |
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| T |
38128806 |
tgaagatggtcctaatgctaagttggatggagtaaat |
38128770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 1810 - 1914
Alignment:
| Q |
16 |
atgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaaatttctgtttatgt |
115 |
Q |
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||||||||||| || ||||| |||||||||||| || ||| || |||||| ||||||||||||||| | |||||||||||||| ||||| | |||||| |
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| T |
1810 |
atgaacctaaattgaagaagataaattggaattctcccatgaagaaagttggcacaaaaaatggtcaaatttatttgagcatgacaattttcgcttatgt |
1909 |
T |
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| Q |
116 |
ttgaa |
120 |
Q |
| |
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||||| |
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|
| T |
1910 |
ttgaa |
1914 |
T |
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