View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10598_low_18 (Length: 203)

Name: NF10598_low_18
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10598_low_18
NF10598_low_18
[»] chr1 (5 HSPs)
chr1 (13-189)||(16054634-16054811)
chr1 (21-68)||(16084179-16084226)
chr1 (31-61)||(16071532-16071562)
chr1 (31-76)||(16029661-16029706)
chr1 (21-68)||(15813691-15813736)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 16054634 - 16054811
Alignment:
Q  13 gcataggatatgacatgaaaataaattatatgtaacatataattattttacatattaatggttaataatccaagcacaaacaaa-taagttaacgcacaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  16054634 gcataggatatgacatgaaaataaattatatgtaacatataattattttacatattaatggttaataatccaaccacaaacaaaataagttaacgcacaa 16054733  T
Q  112 caagtattgttcaggaatgttacacccaattttgtggttatttacttgacaatgaatgtgactgttgcatgaaacaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16054734 caagtattgttcaggaatgttacacccaattttgtggttatttactcgacaatgaatgtgactgttgcatgaaacaaa 16054811  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 16084179 - 16084226
Alignment:
Q  21 tatgacatgaaaataaattatatgtaacatataattattttacatatt 68  Q
    ||||||||  |||||| |||||||||||||||||||||||| ||||||    
T  16084179 tatgacatacaaataacttatatgtaacatataattattttgcatatt 16084226  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 16071532 - 16071562
Alignment:
Q  31 aaataaattatatgtaacatataattatttt 61  Q
    |||||||||||||||||||||||||||||||    
T  16071532 aaataaattatatgtaacatataattatttt 16071562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 16029661 - 16029706
Alignment:
Q  31 aaataaattatatgtaacatataattattttacatattaatggtta 76  Q
    ||||| ||||||| || |||||||| ||||||||||||||||||||    
T  16029661 aaatacattatatatagcatataatcattttacatattaatggtta 16029706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 15813691 - 15813736
Alignment:
Q  21 tatgacatgaaaataaattatatgtaacatataattattttacatatt 68  Q
    ||||||||  ||||||||||||||||||  ||||||||||||||||||    
T  15813691 tatgacatacaaataaattatatgtaac--ataattattttacatatt 15813736  T

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