View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10598_low_2 (Length: 365)
Name: NF10598_low_2
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10598_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 24723664 - 24724008
Alignment:
| Q |
19 |
agaggtttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaat |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24723664 |
agaggtttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatcttctttgtttcctcgtaaagctttaat |
24723763 |
T |
|
| Q |
113 |
gaatcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcgaacagtttgcaaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
24723764 |
gaatcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaacttttcttatgatcaaacagtttgcaaat |
24723863 |
T |
|
| Q |
213 |
tgcaccgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtccttgaaacaagaacattatatgagattaaacttaggg |
312 |
Q |
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| T |
24723864 |
tgcaccgtaaggattgcaa-tttaattctttcaaagcactcgaagtttttcgtggaaacagtccttgaaacaagaacattatatgcgattaaacttaggg |
24723962 |
T |
|
| Q |
313 |
ctgacttgattgtcagtgctagaaacctaagagtgtattcatctct |
358 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
24723963 |
ctgacttgatagtcagtgctagaaacctaagagtgtgttcatctct |
24724008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 21131527 - 21131875
Alignment:
| Q |
19 |
agaggtttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||| |
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| T |
21131527 |
agaggtttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatctttttcgtttcctcgtaaatttttaat |
21131626 |
T |
|
| Q |
113 |
gaatcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcgaacagtttgcaaat |
212 |
Q |
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| T |
21131627 |
gtatcaaatctggcaactggaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcaaacagtttgcaaat |
21131726 |
T |
|
| Q |
213 |
tgcaccgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtccttgaaacaagaacat----tatatgagattaaactt |
308 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||| |||||||||| |
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| T |
21131727 |
tgcaccgcaaggattgcaa-tttaattctttcaaagcactcgaagttttttgtggaaacaatccttgaaacaagaacattatatatatgtgattaaactt |
21131825 |
T |
|
| Q |
309 |
agggctgacttgattgtcagtgctagaaacctaagagtgtattcatctct |
358 |
Q |
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| T |
21131826 |
atggctgacttgatcgtcagtgctagaaaccgaagagtgtgttcatctct |
21131875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 49580512 - 49580630
Alignment:
| Q |
19 |
agaggtttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| || | |||||||||||||||||||| |
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| T |
49580512 |
agaggtttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatcttgagtaatatttctgttttcctcgtaaagctttaat |
49580611 |
T |
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| Q |
113 |
gaatcaaatctggcaactg |
131 |
Q |
| |
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|||||||||| |||||||| |
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| T |
49580612 |
gaatcaaatccggcaactg |
49580630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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