View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10598_low_4 (Length: 353)
Name: NF10598_low_4
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10598_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 23588009 - 23587685
Alignment:
| Q |
23 |
cgagtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588009 |
cgagtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaag |
23587910 |
T |
|
| Q |
123 |
cagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587909 |
cagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaa |
23587810 |
T |
|
| Q |
223 |
atcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaaga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23587809 |
atcttcacctcccaaatgtgtatcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaaga |
23587710 |
T |
|
| Q |
323 |
tcgaaaataagaacgttcttctcac |
347 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
23587709 |
tcgaaaataagaacgttcttctcac |
23587685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 23596861 - 23596537
Alignment:
| Q |
23 |
cgagtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaag |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
23596861 |
cgagtaatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaag |
23596762 |
T |
|
| Q |
123 |
cagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaa |
222 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596761 |
cagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaa |
23596662 |
T |
|
| Q |
223 |
atcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaaga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23596661 |
atcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaaga |
23596562 |
T |
|
| Q |
323 |
tcgaaaataagaacgttcttctcac |
347 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
23596561 |
tcgaaaataagaacgttcttctcac |
23596537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 44 - 341
Target Start/End: Original strand, 54396336 - 54396633
Alignment:
| Q |
44 |
tcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagag |
143 |
Q |
| |
|
||||| || |||||||| ||||||||||| || || || |||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| || | || |
|
|
| T |
54396336 |
tcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaag |
54396435 |
T |
|
| Q |
144 |
cccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgt |
243 |
Q |
| |
|
| |||| ||| |||||||||||||||||||| |||||| | || || ||||||||| |||||||| |||||||||||||||||||| || | ||| || |
|
|
| T |
54396436 |
ctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagt |
54396535 |
T |
|
| Q |
244 |
atcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttct |
341 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||||||||||| || | || |||||||| ||||||| |
|
|
| T |
54396536 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttct |
54396633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 35132600 - 35132644
Alignment:
| Q |
283 |
aatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaa |
327 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
35132600 |
aatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaa |
35132644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 21 - 347
Target Start/End: Original strand, 8102557 - 8102883
Alignment:
| Q |
21 |
cacgagtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgca |
120 |
Q |
| |
|
|||| ||||| || |||||||| |||| |||||||||||| |||||||| |||||||| ||||| || || || || || || ||||| |||||||| || |
|
|
| T |
8102557 |
cacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcaca |
8102656 |
T |
|
| Q |
121 |
agcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatca |
220 |
Q |
| |
|
|| ||||||||||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| || ||||||||||||||| | ||||| ||||||||| |
|
|
| T |
8102657 |
tgcggttctcaatctcctaagtgccctagggtttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatca |
8102756 |
T |
|
| Q |
221 |
aaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaa |
320 |
Q |
| |
|
||||||||||| || | ||| |||||||| || ||||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| | |
|
|
| T |
8102757 |
aaatcttcaccaccaagatgggtatcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccaccca |
8102856 |
T |
|
| Q |
321 |
gatcgaaaataagaacgttcttctcac |
347 |
Q |
| |
|
||| || || | ||||||||||||| |
|
|
| T |
8102857 |
aatcaaagatcaacacgttcttctcac |
8102883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 8017691 - 8017397
Alignment:
| Q |
21 |
cacgagtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgca |
120 |
Q |
| |
|
|||| ||||| || |||||||| |||| |||||||||||| |||||||| |||||||| ||||| |||||||| || || || ||||| |||||||| || |
|
|
| T |
8017691 |
cacgggtgattgtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcaca |
8017592 |
T |
|
| Q |
121 |
agcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatca |
220 |
Q |
| |
|
||| || ||||| || ||||| || || || |||||||||||||||||||| ||||||||||| || || ||||||||||| || ||||| ||||| ||| |
|
|
| T |
8017591 |
agctgtcctcaacctcctaagtgctctagggtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtca |
8017492 |
T |
|
| Q |
221 |
aaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccacc |
315 |
Q |
| |
|
||||||||||| || | ||| ||||||||||| ||||| || || ||||| ||||| |||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
8017491 |
aaatcttcaccaccaagatgggtatcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacc |
8017397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 62 - 321
Target Start/End: Original strand, 39985577 - 39985836
Alignment:
| Q |
62 |
gaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaa |
161 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || || || ||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| | |
|
|
| T |
39985577 |
gaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcctcaacctcctaagagctctggggttgccactga |
39985676 |
T |
|
| Q |
162 |
tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt |
261 |
Q |
| |
|
| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| | ||| || || || ||||| ||||| |
|
|
| T |
39985677 |
tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggcttt |
39985776 |
T |
|
| Q |
262 |
cacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
321 |
Q |
| |
|
||||||||||||||| ||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
39985777 |
cacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaag |
39985836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 234
Target Start/End: Complemental strand, 8383080 - 8382941
Alignment:
| Q |
95 |
gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa |
194 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||| || |||||||||||| |||| || |||||||| ||||| |||| |||||||||||| || | || |
|
|
| T |
8383080 |
gaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaa |
8382981 |
T |
|
| Q |
195 |
caaaatggttcaccatcctgttatcaaaatcttcacctcc |
234 |
Q |
| |
|
|||| | ||||| || |||||||| || ||||||||||| |
|
|
| T |
8382980 |
caaagtacttcacgattctgttatctaagtcttcacctcc |
8382941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 8581664 - 8581805
Alignment:
| Q |
95 |
gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa |
194 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| ||||| ||||||| || ||||||||||| |||| |||| |||| || |||||||| || | |
|
|
| T |
8581664 |
gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccgaca |
8581763 |
T |
|
| Q |
195 |
caaaatggttcaccatcctgttatcaaaatcttcacctccca |
236 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
8581764 |
caaagtgattcaccattctgttatcaaaatcttcccctccca |
8581805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 7877931 - 7877810
Alignment:
| Q |
101 |
gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaat |
200 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||||||| ||| ||| |||||||||||||| || || || |||| |
|
|
| T |
7877931 |
gtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaat |
7877832 |
T |
|
| Q |
201 |
ggttcaccatcctgttatcaaa |
222 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
7877831 |
ggttcaacattctgttatcaaa |
7877810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 8602139 - 8602167
Alignment:
| Q |
296 |
gaaacatcaaaagttccaccaccaagatc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8602139 |
gaaacatcaaaagttccaccaccaagatc |
8602167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 321
Target Start/End: Complemental strand, 17716923 - 17716665
Alignment:
| Q |
63 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
162 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || | ||||| || ||||| |||||||| ||||| || ||||||| ||||| || |||||||| |
|
|
| T |
17716923 |
aatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctcataagagctcttgggttgccactaat |
17716824 |
T |
|
| Q |
163 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttc |
262 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||||||| ||||||||||| ||||||| |||||| |||||||| | ||| | || || ||||||||||| |
|
|
| T |
17716823 |
gtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttta |
17716724 |
T |
|
| Q |
263 |
acctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
321 |
Q |
| |
|
|||| |||| ||| ||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
17716723 |
acctgaaagttacactcttcaatagttagcaaagagacatcaaaagtaccaccaccaag |
17716665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 321
Target Start/End: Complemental strand, 17718187 - 17717926
Alignment:
| Q |
63 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttc-taagagcccttggatttccactaa |
161 |
Q |
| |
|
||||||||||||||||||| || | |||||| || || | ||||| || ||||| |||||||| ||||| |||| ||||||| ||||| || ||||||| |
|
|
| T |
17718187 |
aatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaa-cttcataagagctcttgggttgccactaa |
17718089 |
T |
|
| Q |
162 |
tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt |
261 |
Q |
| |
|
| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| | ||| | || || ||||||||||| |
|
|
| T |
17718088 |
tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttt |
17717989 |
T |
|
| Q |
262 |
cacctcaaagataccttcttcaatagta---agtagtgaaacatcaaaagttccaccaccaag |
321 |
Q |
| |
|
|||| |||| ||| |||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
17717988 |
aacctgaaagttacactcttcaatagtagttagcaaagagacatcaaaagtaccaccaccaag |
17717926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 17622181 - 17622010
Alignment:
| Q |
63 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
162 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||||| || ||||| || |
|
|
| T |
17622181 |
aatcaatttcaatggtggtttggacagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactgat |
17622082 |
T |
|
| Q |
163 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
234 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
17622081 |
gtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctcc |
17622010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 288
Target Start/End: Complemental strand, 17666917 - 17666694
Alignment:
| Q |
65 |
tcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatat |
164 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || | ||||| || ||||| |||||||| | ||| || ||||||| ||||| || ||||| || | |
|
|
| T |
17666917 |
tcaatttcaatggtggtctgagcagtagatgatagagctctcttcgccctctcacaagcagtccccaacctcataagagctcttgggttgccactgatgt |
17666818 |
T |
|
| Q |
165 |
ccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcac |
264 |
Q |
| |
|
|||| || ||||| || ||||| ||||||||||| || |||||||| ||||||| |||||| |||||||| | ||| | || || | ||||||||| || |
|
|
| T |
17666817 |
ccttgttgttctttcttttgaactcttgaacaaagtgattcaccattctgttattaaaatcctcacctccaagatgggggtctccggttgtagctttaac |
17666718 |
T |
|
| Q |
265 |
ctcaaagataccttcttcaatagt |
288 |
Q |
| |
|
| ||| |||||| ||||||||||| |
|
|
| T |
17666717 |
cccaatgataccctcttcaatagt |
17666694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 17648277 - 17648106
Alignment:
| Q |
63 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
162 |
Q |
| |
|
|||||||||||||||||||||| |||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||||| || |||||||| |
|
|
| T |
17648277 |
aatcaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactaat |
17648178 |
T |
|
| Q |
163 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
234 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| || |||||||| ||||||| |||||| |||||||| |
|
|
| T |
17648177 |
gtccttcttgttctttctcttgaacacttgaacaaagtgattcaccattctgttattaaaatcctcacctcc |
17648106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 321
Target Start/End: Complemental strand, 17705899 - 17705716
Alignment:
| Q |
138 |
taagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaa |
237 |
Q |
| |
|
||||||| | ||| || |||||||| |||||||| ||||| |||||||| |||| |||||| ||||||||||| ||||||| |||||| |||||||| | |
|
|
| T |
17705899 |
taagagctcatgggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaag |
17705800 |
T |
|
| Q |
238 |
atgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
321 |
Q |
| |
|
||| || || || | | ||||||| ||||||| || || ||||||| ||| || | || |||||||||| ||||||||||| |
|
|
| T |
17705799 |
atgggtgtctccggatatagctttaacctcaacgacactctcttcaaaagttagcaaagaggcatcaaaagtcccaccaccaag |
17705716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 17704288 - 17704120
Alignment:
| Q |
66 |
caatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatc |
165 |
Q |
| |
|
||||||||||||||||||| |||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||| | | ||||| || || |
|
|
| T |
17704288 |
caatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctctttggtcgccactgatgtc |
17704189 |
T |
|
| Q |
166 |
cttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
234 |
Q |
| |
|
|||| | ||||| |||||||| ||||||||||| | ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
17704188 |
cttcctgttctttctcttgaactcttgaacaaagtagttcaccattctgttattaaaatcctcacctcc |
17704120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 34466991 - 34466906
Alignment:
| Q |
101 |
gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaa |
186 |
Q |
| |
|
|||||||| || ||||||| ||||||||||| || || | ||| || || ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
34466991 |
gtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaa |
34466906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 11209371 - 11209471
Alignment:
| Q |
110 |
gctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcacca |
209 |
Q |
| |
|
||||||||||||||||| ||| || ||||| || ||||||||||||||||| ||| | || | ||||||| ||| |||| |||||||||||||||| |
|
|
| T |
11209371 |
gctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcacca |
11209470 |
T |
|
| Q |
210 |
t |
210 |
Q |
| |
|
| |
|
|
| T |
11209471 |
t |
11209471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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