View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10598_low_8 (Length: 300)
Name: NF10598_low_8
Description: NF10598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10598_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 6386210 - 6386471
Alignment:
| Q |
11 |
cataggagagtattggtcatcctatttactatttttcaaaatatcaaactagtaattttcttttatagagttcaactttgatacaccgaaaatgaattct |
110 |
Q |
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| T |
6386210 |
cataggagagtattggccatcctatttactatttttcaaaatatcaaact-------------tttagagttcaactttgatacaccgaaaatgaattct |
6386296 |
T |
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| Q |
111 |
---ggtagatcacaatcaattatgtgtgatgttagatgtgattaagtcattcgttttcaacaatcttacgaatatgtttgattatataaatattcgttaa |
207 |
Q |
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| T |
6386297 |
cttggtagatcacaatcaattatgtgtgatgttagatgtgattaagtcattcgttttcaacaatcttacgaatatgtttgattatataaatattcgttaa |
6386396 |
T |
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| Q |
208 |
tgaatttaaattaaatgtattaagttttcaacttgtacgtattgacattgtataacttttttacacatgcatcaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
6386397 |
tgaatttaaattaaatgtattaagttttcaacttgtgcgtattgatattgtataacttttttacacatgcatcaa |
6386471 |
T |
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