View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10599_high_3 (Length: 385)

Name: NF10599_high_3
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10599_high_3
NF10599_high_3
[»] chr3 (2 HSPs)
chr3 (1-217)||(7023218-7023434)
chr3 (288-370)||(7023505-7023587)
[»] chr1 (5 HSPs)
chr1 (56-199)||(11124899-11125047)
chr1 (288-332)||(11125148-11125192)
chr1 (1-45)||(49350453-49350497)
chr1 (11-47)||(49527415-49527451)
chr1 (1-45)||(52921050-52921094)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-45)||(440155-440199)
[»] chr7 (1 HSPs)
chr7 (288-327)||(27572537-27572576)
[»] chr4 (1 HSPs)
chr4 (2-45)||(883510-883553)
[»] chr5 (1 HSPs)
chr5 (288-329)||(15047210-15047251)
[»] scaffold0279 (1 HSPs)
scaffold0279 (1-45)||(18454-18498)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-45)||(48239-48283)
[»] chr8 (1 HSPs)
chr8 (288-320)||(45000097-45000129)
[»] chr6 (1 HSPs)
chr6 (1-45)||(6079646-6079690)
[»] chr2 (1 HSPs)
chr2 (1-45)||(16290814-16290858)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7023218 - 7023434
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgttgcttgttggtactattttcttatattctaagagcttcaatttgaaaattttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023218 aactttatcaaatctctatgacatggaccagatacgaaacagtgttggttgttggtactattttcttatattctaagagcttcaatttgaaaattttgtg 7023317  T
Q  101 gggtgagctttgcaaatgcaacataatcttttcacaagttcaagaatggtaaaattgacacatcaaaaaagaggatagagtggaaccttatcataatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023318 gggtgagctttgcaaatgcaacataatcttttcacaagttcaagaatggtaaaattgacacatcaaaaaagaggatagagtggaaccttatcataatcat 7023417  T
Q  201 cattgccggactcgcta 217  Q
    |||||||||||||||||    
T  7023418 cattgccggactcgcta 7023434  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 7023505 - 7023587
Alignment:
Q  288 gttaggaacccaagagttggattccaaagaaataatacttttgattaaaactaaccaataatggaaaatacaacagaaaacag 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023505 gttaggaacccaagagttggattccaaagaaataatacttttgattaaaactaaccaataatggaaaatacaacagaaaacag 7023587  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 11124899 - 11125047
Alignment:
Q  56 tactattttcttatattctaagagcttcaatttgaaaattttgtggggtgagctttgcaaatgcaacataa-----tcttttcacaagttcaagaatggt 150  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| |||||| || ||||| |||||||      ||||||||||||| ||| ||||||    
T  11124899 tactattttcttatattctaagaacttcaatttgaaaattttatggcgtgagccttacaaatacaacatatcatattcttttcacaagtacaaaaatggt 11124998  T
Q  151 aaaattgacacatcaaaaaagaggatagagtggaaccttatcataatca 199  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||||    
T  11124999 aaaattaacacatcaaagtagaggatagagtggaaccttattataatca 11125047  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 11125148 - 11125192
Alignment:
Q  288 gttaggaacccaagagttggattccaaagaaataatacttttgat 332  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||    
T  11125148 gttaggaacccaagagttggattccaatgaaataacacttttgat 11125192  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49350497 - 49350453
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||| || |||||||||||||||||||| |||||||| |||||    
T  49350497 aactttgtcgaatctctatgacatggaccaaatacgaaatagtgt 49350453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 49527451 - 49527415
Alignment:
Q  11 aatctctatgacatggaccagatacgaaacagtgttg 47  Q
    |||||||||||||||||||| |||||||| |||||||    
T  49527451 aatctctatgacatggaccaaatacgaaatagtgttg 49527415  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 52921050 - 52921094
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||| || |||||||||||||||||||| |||||||| |||||    
T  52921050 aactttgtcgaatctctatgacatggaccaaatacgaaatagtgt 52921094  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 440155 - 440199
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||    
T  440155 aactttgtcaaatctctatgacatggaccaaatacgaaatagtgt 440199  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 27572576 - 27572537
Alignment:
Q  288 gttaggaacccaagagttggattccaaagaaataatactt 327  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  27572576 gttaggaacccaaggattggattccaaagaaataatactt 27572537  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 883553 - 883510
Alignment:
Q  2 actttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||||| |||||||||||||||||||| |||||||| |||||    
T  883553 actttatcgaatctctatgacatggaccaaatacgaaatagtgt 883510  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 15047251 - 15047210
Alignment:
Q  288 gttaggaacccaagagttggattccaaagaaataatactttt 329  Q
    ||||||||||||||| |||||||||||||||| || ||||||    
T  15047251 gttaggaacccaagaattggattccaaagaaagaacactttt 15047210  T

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Target: scaffold0279 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18454 - 18498
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||| || |||||||||||||||||||| |||||||| |||||    
T  18454 aactttgtcgaatctctatgacatggaccaaatacgaaatagtgt 18498  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48283 - 48239
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    ||||||||| ||||||||||||||||| || |||||||| |||||    
T  48283 aactttatcgaatctctatgacatggatcaaatacgaaatagtgt 48239  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 45000097 - 45000129
Alignment:
Q  288 gttaggaacccaagagttggattccaaagaaat 320  Q
    ||||||||||||||| |||||||||||||||||    
T  45000097 gttaggaacccaagaattggattccaaagaaat 45000129  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6079646 - 6079690
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||| || |||||||||||||||||||| |||||||| |||||    
T  6079646 aactttgtcgaatctctatgacatggaccacatacgaaatagtgt 6079690  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16290814 - 16290858
Alignment:
Q  1 aactttatcaaatctctatgacatggaccagatacgaaacagtgt 45  Q
    |||||| || |||||||||||||||||||| |||||||| |||||    
T  16290814 aactttgtcgaatctctatgacatggaccaaatacgaaatagtgt 16290858  T

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