View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10599_high_5 (Length: 254)

Name: NF10599_high_5
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10599_high_5
NF10599_high_5
[»] chr6 (4 HSPs)
chr6 (160-240)||(8132651-8132731)
chr6 (172-242)||(2806452-2806521)
chr6 (18-82)||(8132461-8132525)
chr6 (172-235)||(2811932-2811995)
[»] chr4 (1 HSPs)
chr4 (194-234)||(40251887-40251927)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 8132651 - 8132731
Alignment:
Q  160 atgttattgtatatcatgtgatgagaaaataactgcaacaatatgatggattcgttccatgattcctagtatttaagtctc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8132651 atgttattgtatatcatgtgatgagaaaataactgcaacaatacgatggattcgttccatgattcctagtatttaagtctc 8132731  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 2806452 - 2806521
Alignment:
Q  172 atcatgtgatgagaaaataactgcaacaatatgatggattcgttccatgattcctagtatttaagtctctg 242  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2806452 atcatgtgatgagaaaa-aactgcaacaatatgatggattcgttccatgattcttagtatttaagtctctg 2806521  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 8132461 - 8132525
Alignment:
Q  18 cagtttttctataaacaactaaccatgtttattaatccacacaccaaaacattcccttcactgta 82  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  8132461 cagtttttctataaacaaccaaccatgtttataaattcacacaccaaaacattcccttcactgta 8132525  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 2811932 - 2811995
Alignment:
Q  172 atcatgtgatgagaaaataactgcaacaatatgatggattcgttccatgattcctagtatttaa 235  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  2811932 atcatttgatgagaaaaaaactgcaacaatatgatggatttgttccatgattcctagtatttaa 2811995  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 40251927 - 40251887
Alignment:
Q  194 gcaacaatatgatggattcgttccatgattcctagtattta 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  40251927 gcaacaatatgatgaattcgttccctgattcctagtattta 40251887  T

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