View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_1 (Length: 458)
Name: NF10599_low_1
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 20531913 - 20531482
Alignment:
| Q |
17 |
agaagaatggtcactagttgtttctgggattatgaacaccaacaacgaatggtcagaaacaattcgtaatttgaatagttttgagcacaatcctatccaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531913 |
agaagaatggtcactagttgtttctgggattatgaacaccaacaacgaatggtcagaaacaattcgtaatttgaatagttttgagcacaatcctatccaa |
20531814 |
T |
|
| Q |
117 |
aaacctatttcattctcacctcctttttccaccacgtcactaaattcatctccttcatctattgtttcaccagcttctgaattttccaaacaatcattaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20531813 |
aaacctatttcattctcacctcctttttccaccacgtcactaaattcatctccttcatctattgtttcaccagcttctgagttttccaaacaatcattaa |
20531714 |
T |
|
| Q |
217 |
tggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaatttgacag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531713 |
tggaagctgccactgcaatttctgaaggcaaaatggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaatttgacag |
20531614 |
T |
|
| Q |
317 |
ttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaacacactgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531613 |
ttggttattggattgcattgcttcagcgctgaaatcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaacacactgat |
20531514 |
T |
|
| Q |
417 |
tcaactcagcttctgtttgataactccctttg |
448 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
20531513 |
tcaactcagcttctgtttgataactctctttg |
20531482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 452
Target Start/End: Complemental strand, 28297231 - 28296830
Alignment:
| Q |
51 |
aacaccaacaacgaatggtcagaaacaattcgtaatttgaatagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccacca |
150 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||||||| |||||| | |||| ||| |
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| T |
28297231 |
aacaccaacaacgaatggttagaaacaatccgtaatttgaatagtttcgagcaaaatcctatccagaaacctgtttcattttcacctacctttttagcca |
28297132 |
T |
|
| Q |
151 |
cgtcactaaattcatctccttcatctattgtttcaccagcttctgaattttccaaacaatcattaatggaagctgccactgcaatttctgaaggcaaaat |
250 |
Q |
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| | ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||| ||| ||||||||||||||||| |
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| T |
28297131 |
cattgctatattcatctccttcatctattgtttcacctgcttctgagttttccaaacaattgttaatggaaactgccattgcgatttctgaaggcaaaat |
28297032 |
T |
|
| Q |
251 |
ggattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaatttgacagttggttattggattgcattgcttcagcgctgaaa |
350 |
Q |
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| | ||||| ||||||||||||||| ||||||| || ||||||||| ||||||| |||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
28297031 |
gaaatatgcgaaggagatcctctctcgtttctctcaaacacaaaactcaaaactgaaatttgatcgttggttattggattgcatggcttcaacgctgaaa |
28296932 |
T |
|
| Q |
351 |
tcgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaacacactgattcaactcagcttctgtttgataactccctttgct |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||| || ||||| ||||| ||||| |||| ||||||| |
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| T |
28296931 |
tcgcgtgtgaataacattgaaaatccacctcctgtagtggaattgttcagcaaagaacatgctgagtcgactcaccttctccttgatcactctctttgct |
28296832 |
T |
|
| Q |
451 |
tc |
452 |
Q |
| |
|
|| |
|
|
| T |
28296831 |
tc |
28296830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 52 - 452
Target Start/End: Original strand, 28295530 - 28295930
Alignment:
| Q |
52 |
acaccaacaacgaatggtcagaaacaattcgtaatttgaatagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccac |
151 |
Q |
| |
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||||||| || ||||||||| ||||||| ||||||||||||| ||||||| | || |||||||| |||||| |||||| ||||| | |||||| | || |
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| T |
28295530 |
acaccaataaagaatggtcaaaaacaatccgtaatttgaataattttgagaaaaaccctatccataaacctgtttcatcctcacatactttttatgcaac |
28295629 |
T |
|
| Q |
152 |
gtcactaaattcatctccttcatctattgtttcaccagcttctgaattttccaaacaatcattaatggaagctgccactgcaatttctgaaggcaaaatg |
251 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||| | |||||| | ||||||| ||| |||||| |
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| T |
28295630 |
atcgctaaattcatctccttcatctattgtttcacctgcttatgagttttccaaacaatcgttaatggatgttgccaccacgatttctggaggaaaaatg |
28295729 |
T |
|
| Q |
252 |
gattatgctaaggagatcctctctagtttctcacatacacaaaacccaaaactaaaatttgacagttggttattggattgcattgcttcagcgctgaaat |
351 |
Q |
| |
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|| ||||| ||||||||||| ||| |||||| || ||||||||||||||||| || ||||| |||||||||| |||||||| |||| |||||| |||| |
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| T |
28295730 |
gaatatgcgaaggagatcctttctcctttctctcaaacacaaaacccaaaactgaattttgatcgttggttattagattgcatggctttagcgcttaaat |
28295829 |
T |
|
| Q |
352 |
cgcgtgtgaataacattgaaaatccacctccagttgcagaattgttcagcaaagaacacactgattcaactcagcttctgtttgataactccctttgctt |
451 |
Q |
| |
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||||| || ||||||||||||||||||||||| | |||||||| ||||||||||| ||| || ||||| ||||| ||||| |||| |||||||| |
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| T |
28295830 |
cgcgtatggataacattgaaaatccacctccaataatggaattgtttagcaaagaacatgttgagtcgactcaccttctccttgatcactctctttgctt |
28295929 |
T |
|
| Q |
452 |
c |
452 |
Q |
| |
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| |
|
|
| T |
28295930 |
c |
28295930 |
T |
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