View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_12 (Length: 339)
Name: NF10599_low_12
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_12 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 55 - 339
Target Start/End: Complemental strand, 5495546 - 5495262
Alignment:
| Q |
55 |
tagagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatatt |
154 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| | |||||||||||||||||||||||||| |
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| T |
5495546 |
tagagatatcaagataatgcaagtttgacaaattgccaagatgaggggggaccattccagaaaaatatgaatctgataagtcaaggtaattgagcatatt |
5495447 |
T |
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| Q |
155 |
gagggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatc |
254 |
Q |
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|||||||||||||||||||||||||| || | ||||||| | ||| || || |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5495446 |
gagggaaccaataaattctggaatgggaactccttcgaaatcattatatcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatc |
5495347 |
T |
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| Q |
255 |
ttaccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatgac |
339 |
Q |
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| T |
5495346 |
ttaccaccaaagggagacagtgaaaatatacttacagttttgatgcagataagatagggcctgagcttaagctttaaaacatgac |
5495262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 5489814 - 5489480
Alignment:
| Q |
11 |
cagagaagatagccagcttaagtctctagcccaaagtga------tggactagagatatcaagataatgcaaatttgacaaattgccaagatgatttggg |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| ||||||||||||| | | ||| |
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| T |
5489814 |
cagagcagatagccagcttaagtctctagcccaaagtgacgaatatgggctagagatatcaagatagtgtaaatttgataaattgccaagattagtcggg |
5489715 |
T |
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| Q |
105 |
actactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaatggaaatttcttcgaagttattgtaac |
204 |
Q |
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| T |
5489714 |
accattccagtgaaatttgcattggacaagtcaaggtaattgagcatattgagataaccaataaattctggaatgggagctccttcaaagtcactatagc |
5489615 |
T |
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| Q |
205 |
tcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatcttaccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagat |
304 |
Q |
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| T |
5489614 |
ttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaaggaaggcgatgacagtatattaatagttttggtgcagat |
5489515 |
T |
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| Q |
305 |
aagatagcgctggagctcaaactttagaacatgac |
339 |
Q |
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|||||| ||| |||||||||||||| ||||||||| |
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| T |
5489514 |
aagataacgccggagctcaaacttttgaacatgac |
5489480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 5476689 - 5476359
Alignment:
| Q |
11 |
cagagaagatagccagcttaagtctctagcccaaagtga------tggactagagatatcaagataatgcaaatttgacaaattgccaagatgatttggg |
104 |
Q |
| |
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||||| ||| ||||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||||||||||||| ||||||| | | ||| |
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| T |
5476689 |
cagagcagaaagccagcttaagtctctgacccaaactgaagaatctgaactagagatatcaagatggtgcaaatttgacaaattaccaagatcagtaggg |
5476590 |
T |
|
| Q |
105 |
actactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaatggaaatttcttcgaagttattgtaac |
204 |
Q |
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|| | ||| | ||| | || | | ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
5476589 |
accattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttattgtaac |
5476490 |
T |
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| Q |
205 |
tcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggattt-atctt-accgccgaagggagagagtgaaaatgtacttgcagttttgttgcag |
302 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||| || || |||||| | | ||||||||| ||||| |||||||||||||| |
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| T |
5476489 |
tcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttaatattcaccgcc------aaaaagtgaaaatatacttacagttttgttgcag |
5476396 |
T |
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| Q |
303 |
ataagatagcgctggagctcaaactttagaacatgac |
339 |
Q |
| |
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|||| |||| | ||||||||||||||||| ||||| |
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| T |
5476395 |
ataacataggtattgagctcaaactttagaatatgac |
5476359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 56 - 339
Target Start/End: Complemental strand, 5484578 - 5484295
Alignment:
| Q |
56 |
agagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattg |
155 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||| ||||| | ||||| ||||| |||| | |||| |||||||||||| | ||| ||| |
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| T |
5484578 |
agagatatcaaggtagcgcaaatttgacaaattgccaagatgattagggacaattccagtaaaatttgcatttgataggtcaaggtaattcaacattttg |
5484479 |
T |
|
| Q |
156 |
agggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatct |
255 |
Q |
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|| ||||||||| ||||||||||| |||| ||||||| | |||| | || | |||||||||||||||| || ||||||| || |||||||||||||||| |
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| T |
5484478 |
agagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatct |
5484379 |
T |
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| Q |
256 |
taccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatgac |
339 |
Q |
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||| ||||||| || |||| | | || ||| ||| || |||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
5484378 |
caccaccgaaggctgactgtgacagtatagttgtggttctggtgcagataagatagggcttgagctcaaactttagaacatgac |
5484295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 5481715 - 5481510
Alignment:
| Q |
55 |
tagagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatatt |
154 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||| |||| | ||| | ||||| |||| | |||||||||||||||||||||||||| |
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| T |
5481715 |
tagagatatcaagataatgcaaatttgacagattgccaagatgaggaaggaccattcctgtaaaatttgcattagataagtcaaggtaattgagcatatt |
5481616 |
T |
|
| Q |
155 |
gagggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatc |
254 |
Q |
| |
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||| |||||||||||||||||||||| || | ||| ||| | ||| | || ||||||||||||||||| |||| |||| | | ||||||||||||||| |
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| T |
5481615 |
gagagaaccaataaattctggaatgggaactcctttgaaatcattaaagcttaggtccaagtgactcaaatgttttaagttaactaatgaaggatttatc |
5481516 |
T |
|
| Q |
255 |
ttaccg |
260 |
Q |
| |
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|||||| |
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|
| T |
5481515 |
ttaccg |
5481510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 56 - 271
Target Start/End: Complemental strand, 5466970 - 5466755
Alignment:
| Q |
56 |
agagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattg |
155 |
Q |
| |
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||||| |||||||| |||||||||||||||||| || |||||| ||||| | ||||||||||| |||| |||||| ||||||||||||||| ||||| |
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| T |
5466970 |
agagacatcaagatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
5466871 |
T |
|
| Q |
156 |
agggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatct |
255 |
Q |
| |
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| T |
5466870 |
agagaaccaataaattcaggaatgggaactcctttgaaatcattatagctcaagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatct |
5466771 |
T |
|
| Q |
256 |
taccgccgaagggaga |
271 |
Q |
| |
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|||| || |||||||| |
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| T |
5466770 |
tacctcccaagggaga |
5466755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 5500631 - 5500566
Alignment:
| Q |
11 |
cagagaagatagccagcttaagtctctagcccaaagtgatggactagagatatcaagataatgcaa |
76 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5500631 |
cagagcagatagccagcttaagtctctagtccaaagtgatggactagagatatcaagataatgcaa |
5500566 |
T |
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Back To:
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