View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10599_low_13 (Length: 318)

Name: NF10599_low_13
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10599_low_13
NF10599_low_13
[»] chr3 (1 HSPs)
chr3 (11-300)||(47781757-47782046)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 47781757 - 47782046
Alignment:
Q  11 cacagagtgacctatcaaacccaacctccatggtaccccacatcctcaaatttaaataattttataggggaaatttatgagagacatgcattagccacgc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47781757 cacaaagtgacctatcaaacccaacctccatggtaccccacatcctcaaatttaaataattttataggggaaatttatgagagacatgcattagccacgc 47781856  T
Q  111 ccacaccccaattttttcatggcaacgcattaagacagctcaaacaatattgatcgagtttaattgaagagtaggaaggagatgattcgcatgttgaagt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47781857 ccacaccccaattttttcatggcaacgcattaagacagctcaaacaatattgatcgagtttaattgaagagtaggaaggagatgattcgcatgttgaagt 47781956  T
Q  211 ttggtgtgagctatgaatgaatacttttaatactttcaagccatcatccatatgcccactcatctacaaagacattttatttatgaatct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47781957 ttggtgtgagctatgaatgaatacttttaatactttcaagccatcatccatatgcccactcatctacaaagacattttatttatgaatct 47782046  T

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