View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_16 (Length: 284)
Name: NF10599_low_16
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 38185220 - 38185462
Alignment:
| Q |
19 |
agaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaat |
118 |
Q |
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| T |
38185220 |
agaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaat |
38185319 |
T |
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| Q |
119 |
gagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgt |
218 |
Q |
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| T |
38185320 |
gagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgt |
38185419 |
T |
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| Q |
219 |
gaaaatgcaatagcacgagctaagtgttcttatataagtggtg |
261 |
Q |
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| T |
38185420 |
gaaaatgcaatagcacaagctaagtgttcttatataagtggtg |
38185462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 38180551 - 38180768
Alignment:
| Q |
19 |
agaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaat |
118 |
Q |
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| T |
38180551 |
agaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaat |
38180650 |
T |
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| Q |
119 |
gagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgt |
218 |
Q |
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| T |
38180651 |
gagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgt |
38180750 |
T |
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| Q |
219 |
gaaaatgcaatagcacga |
236 |
Q |
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| T |
38180751 |
gaaaatgcaatagcacga |
38180768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 38170737 - 38170947
Alignment:
| Q |
19 |
agaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaat |
118 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
38170737 |
agaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgcccaaagaaat |
38170836 |
T |
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| Q |
119 |
gagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgt |
218 |
Q |
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||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
38170837 |
gagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgt |
38170936 |
T |
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| Q |
219 |
gaaaatgcaat |
229 |
Q |
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||||||||||| |
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| T |
38170937 |
gaaaatgcaat |
38170947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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