View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10599_low_17 (Length: 264)
Name: NF10599_low_17
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 49381597 - 49381357
Alignment:
| Q |
8 |
ggactattgtcttgtggaacaaggattgttacagacaacaaggaagttgggtcggcaaaaagagtagcagcattataagcatgttgagaaatgagagcac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49381597 |
ggactattgtcttgtggaacaaggattgttacagacaacaaggaagttgggtcggcaaaaagagtagcagcattataagcatgttgagaaatgagagcac |
49381498 |
T |
|
| Q |
108 |
caatgtgctatgaccactttactctcttttgttggtctcaattgtccactcaatgtgtccccacatatacatattcgaatttcaatttcctacagtcagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
49381497 |
caatgtgctatgaccactttactctcttttgttggtctcaattgtccactcaatgtgtcccctcatatacatattcgaatttcaattttctatagtcagc |
49381398 |
T |
|
| Q |
208 |
aattcgcgcattcatacaatcaggacgttggtggtcacttg |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49381397 |
aattcgcgcattcacacaatcaggacgttggtggtcacttg |
49381357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University