View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10599_low_19 (Length: 258)

Name: NF10599_low_19
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10599_low_19
NF10599_low_19
[»] chr1 (12 HSPs)
chr1 (6-241)||(14467650-14467885)
chr1 (11-241)||(14481832-14482062)
chr1 (17-226)||(14522665-14522874)
chr1 (17-236)||(15010852-15011071)
chr1 (17-207)||(15001988-15002178)
chr1 (17-207)||(15016996-15017186)
chr1 (17-225)||(14532786-14532994)
chr1 (17-207)||(15024998-15025188)
chr1 (17-207)||(15032339-15032529)
chr1 (17-207)||(15036901-15037091)
chr1 (22-225)||(14503845-14504048)
chr1 (46-235)||(15040612-15040801)
[»] scaffold0400 (2 HSPs)
scaffold0400 (17-236)||(6343-6562)
scaffold0400 (17-225)||(12642-12850)
[»] scaffold0365 (2 HSPs)
scaffold0365 (17-236)||(6987-7206)
scaffold0365 (17-225)||(13285-13493)
[»] chr7 (5 HSPs)
chr7 (24-74)||(14605912-14605962)
chr7 (24-74)||(16025089-16025139)
chr7 (25-74)||(16102894-16102943)
chr7 (25-74)||(16172571-16172620)
chr7 (25-172)||(17848447-17848594)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 14467885 - 14467650
Alignment:
Q  6 tgagatgaagagaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaa 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| || |||||||| ||||||||||||||||||    
T  14467885 tgagctgaagagaatggtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaa 14467786  T
Q  106 aaattctcgctaagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaata 205  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14467785 aaattctcactaagatcaagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaata 14467686  T
Q  206 actttgacaaacttccaagttgttttgggattgaac 241  Q
    || |||||||||||||||||||||||||||||||||    
T  14467685 acattgacaaacttccaagttgttttgggattgaac 14467650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 14482062 - 14481832
Alignment:
Q  11 tgaagagaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaatt 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| || |||||||| |||||||||||||||||||||||    
T  14482062 tgaagggaatggtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaatt 14481963  T
Q  111 ctcgctaagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataacttt 210  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  14481962 ctcactaagatcaagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacatt 14481863  T
Q  211 gacaaacttccaagttgttttgggattgaac 241  Q
    |||||||||||||||||||||||||||||||    
T  14481862 gacaaacttccaagttgttttgggattgaac 14481832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 14522665 - 14522874
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||| ||||| | ||||||||||||||||||||||||||||| |||   |||||||| || | |||||  || |||||||| |||||||||||| ||||    
T  14522665 gaatgttaccatagagattattatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaaaaattcccgct 14522764  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    |||||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| | |||||     
T  14522765 aagatcaagatcttcaataacattcaattgaccaagttcaacaggaatgtttccttcaaacttattttggctcaaattcaactgcaataacctagacaac 14522864  T
Q  217 cttccaagtt 226  Q
    ||||||||||    
T  14522865 cttccaagtt 14522874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 15011071 - 15010852
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||  |||||||| || | |||||| || |||||||| |||| | ||||| | ||    
T  15011071 gaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccact 15010972  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||| ||||| || ||||||||| | |||||     
T  15010971 aagatcaagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaac 15010872  T
Q  217 cttccaagttgttttgggat 236  Q
     | ||||||| ||| |||||    
T  15010871 ataccaagttttttagggat 15010852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 15002178 - 15001988
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||  |||||||| || | |||||| || |||||||| |||| | ||||| | ||    
T  15002178 gaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccact 15002079  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataac 207  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||| ||||| || |||||||||    
T  15002078 aagatcaaggttttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataac 15001988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 15017186 - 15016996
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||  |||||||| || | |||||| || |||||||| |||| | ||||| | ||    
T  15017186 gaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccact 15017087  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataac 207  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||| ||||| || | |||||||    
T  15017086 aagatcaagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaacttcaataac 15016996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 14532786 - 14532994
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||| |||||||||||||||||||| |||||||||||||  ||||  |||||||| || | |||||  || ||||||||  ||| || ||| || ||    
T  14532786 gaatggttccagaaagattattatgtgaaagattcaatgtttgtaagtgatttaactgtccaagcattgatggtatggttccactcataacattttcact 14532885  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||| ||| |||||||| || | |||||  |||||     
T  14532886 aagatcaagatcttcaataacctttaattggtcaaactcaacaggaatgtttccttcgaacttattttggctcaaattcaaatgtattaactcagacaac 14532985  T
Q  217 cttccaagt 225  Q
    |||||||||    
T  14532986 cttccaagt 14532994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 15025188 - 15024998
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||   ||||||||||| | |||||  || |||||||| |||| ||||||| | ||    
T  15025188 gaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccact 15025089  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataac 207  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||||||| || |||||| |||||| ||| ||||| || |||||||||    
T  15025088 aagatcaagattttcaataacattcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataac 15024998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 15032529 - 15032339
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||   ||||||||||| | |||||  || |||||||| |||| ||||||| | ||    
T  15032529 gaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccact 15032430  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataac 207  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||||||| || |||||| |||||| ||| ||||| || |||||||||    
T  15032429 aagatcaagattttcaataacattcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataac 15032339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 15037091 - 15036901
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||  |||||||| || | |||||| || |||||||| |||| | ||||| | ||    
T  15037091 gaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccact 15036992  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataac 207  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||| | |||| | ||| |||||||| |||||||||    
T  15036991 aagatcaaggttttcaataacattcaattggccaaactcaacaggaatgttcccctcaagcttattatggctcaaattcaactgcaataac 15036901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 14504048 - 14503845
Alignment:
Q  22 gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat 121  Q
    |||||||| ||||||||||||||||||||||||||||| || |  ||||||   || |||||||  || || ||||| |||| ||||||  | || ||||    
T  14504048 gtaccagacagattattatgtgagagattcaatgtttctaaatgatttaacactccaaacattgaaggtatcgttccattcataaaatttccactgagat 14503949  T
Q  122 caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc 221  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||| |||||||| || | |||||  ||||| |||||    
T  14503948 caagatcttcaataacatttaatcggccaaactcaacgggaatgtttccttcaaacttattttggctcaaattcaaatgtattaactcagacaaccttcc 14503849  T
Q  222 aagt 225  Q
    ||||    
T  14503848 aagt 14503845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 15040801 - 15040612
Alignment:
Q  46 agattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaagatcttcaataacatttaatt 145  Q
    |||||||||||||| |||   |||||||| || | |||||  || |||||||| |||||| ||||| | ||||||||||||| ||||||||| ||||| |    
T  15040801 agattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaagaattcccactaagatcaagattttcaataacttttaact 15040702  T
Q  146 ggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttccaagttgttttggga 235  Q
    | |||| |||| |||||||||||||||||||| |||||| ||| | ||| ||||| |||||| | || || |||||||||||||||||||    
T  15040701 gtccaatctcatcaggaatgtttccttcaaacttattttggctcatatttaagtgtaataacatagataatcttccaagttgttttggga 15040612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 6562 - 6343
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||   |||||||  || | |||||  || |||||||| ||||||| |||||||||    
T  6562 gaatggtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctccaagcattgttggtatggttccattcaaaacattctcgct 6463  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    ||||||||||| ||||||||  || ||||| ||||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||| || |  ||     
T  6462 aagatcaagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaat 6363  T
Q  217 cttccaagttgttttgggat 236  Q
    ||||||||||||| ||||||    
T  6362 cttccaagttgttctgggat 6343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 12850 - 12642
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||| |||||||||||||||||||| |||||||||||||  | ||  |||||||| || | |||||  || ||||||||||||||||||||  | ||    
T  12850 gaatggttccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccact 12751  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    ||| ||||||||||||||||| | |||||||||||||||||  |||||||||||||||||| |||||| ||| |||||||| || | |||||  |||||     
T  12750 aaggtcaagatcttcaataacttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaac 12651  T
Q  217 cttccaagt 225  Q
    |||||||||    
T  12650 cttccaagt 12642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 7206 - 6987
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||   |||||||  || | |||||  || |||||||| ||||||| |||||||||    
T  7206 gaatggtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctccaagcattgttggtatggttccattcaaaacattctcgct 7107  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    ||||||||||| ||||||||  || ||||| ||||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||| || |  ||     
T  7106 aagatcaagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaat 7007  T
Q  217 cttccaagttgttttgggat 236  Q
    ||||||||||||| ||||||    
T  7006 cttccaagttgttctgggat 6987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 13493 - 13285
Alignment:
Q  17 gaatggtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgct 116  Q
    ||||||| |||||||||||||||||||| |||||||||||||  | ||  |||||||| || | |||||  || ||||||||||||||||||||  | ||    
T  13493 gaatggttccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccact 13394  T
Q  117 aagatcaagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaa 216  Q
    ||| ||||||||||||||||| | |||||||||||||||||  |||||||||||||||||| |||||| ||| |||||||| || | |||||  |||||     
T  13393 aaggtcaagatcttcaataacttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaac 13294  T
Q  217 cttccaagt 225  Q
    |||||||||    
T  13293 cttccaagt 13285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 14605962 - 14605912
Alignment:
Q  24 accagaaagattattatgtgagagattcaatgtttccaagtattttaactg 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  14605962 accagaaagattattatgtgagatattcaatgtttccaagtatttcaactg 14605912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 16025139 - 16025089
Alignment:
Q  24 accagaaagattattatgtgagagattcaatgtttccaagtattttaactg 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  16025139 accagaaagattattatgtgagatattcaatgtttccaagtatttcaactg 16025089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 16102943 - 16102894
Alignment:
Q  25 ccagaaagattattatgtgagagattcaatgtttccaagtattttaactg 74  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  16102943 ccagaaagattattatgtgagatattcaatgtttccaagtatttcaactg 16102894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 16172620 - 16172571
Alignment:
Q  25 ccagaaagattattatgtgagagattcaatgtttccaagtattttaactg 74  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  16172620 ccagaaagattattatgtgagatattcaatgtttccaagtatttcaactg 16172571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 17848594 - 17848447
Alignment:
Q  25 ccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaa 124  Q
    |||||||| ||||||||||| | |||||||| ||| |||||| | |  ||  | | | ||| ||| || |||||||| | ||||||| | ||||||||||    
T  17848594 ccagaaaggttattatgtgatatattcaatgattctaagtatatcagttgagcaagcgttgacggtattgttccgttgagaaaattcccactaagatcaa 17848495  T
Q  125 gatcttcaataacatttaattggccaaactcaacaggaatgtttcctt 172  Q
    ||  || ||  || || ||||||||||||||||||||||| |||||||    
T  17848494 gactttgaaggactttaaattggccaaactcaacaggaatatttcctt 17848447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University