View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_2 (Length: 438)
Name: NF10599_low_2
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 27778316 - 27778718
Alignment:
| Q |
18 |
gtattgttgggttctttggtgatttttgtgtattcggttacacttagaggtcatgggaatattgaacctaataggtcatatttagaatatcgtgtggatg |
117 |
Q |
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| T |
27778316 |
gtattgttgggttctttggtgatttttgtgtattcagttacacttagaggtcatgggaatattgaacctaataggtcatatttagaatatcgagtggatg |
27778415 |
T |
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| Q |
118 |
atttttcattttggcttcgtagaagggttagaagttcacataaatgggatggaataaagagttgtcttagttcatcaaatatgtgtgctgagttgaatca |
217 |
Q |
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| T |
27778416 |
atttttcattttggcttcgtagaagggttagaagttcacataaatgggatggaataaagagttgtcttagttcatcaaatatgtgtgctgagttgaatca |
27778515 |
T |
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| Q |
218 |
aagttatagaattgctcaagannnnnnnaatgctcacctatcacctttgcaggtaa----atccactaatccattacttgatttgttttcacctaattaa |
313 |
Q |
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| T |
27778516 |
aagttatagaattgctcaagatttctttaatgctcacctatcacctttgcaggtaaatccatccactaatccattacttgatttgttttcacctaattaa |
27778615 |
T |
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| Q |
314 |
cctaattcaatccaatagtataacattcttgttggttcatgattacaattatgattttgaatcagagtggtagttgctttgtgattacaattatgattta |
413 |
Q |
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| T |
27778616 |
cctaattcaatccaatagtgtaacattcttgttggttcatgattacaattatgattttgaatcagagtggtagttgctttgtgattacaattatgattaa |
27778715 |
T |
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| Q |
414 |
tta |
416 |
Q |
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| T |
27778716 |
tta |
27778718 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 12639499 - 12639591
Alignment:
| Q |
32 |
tttggtgatttttgtgtattcggttacacttagaggtcatgggaatattgaacctaataggtcatatttagaatatcgtgtggatgatttttc |
124 |
Q |
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| T |
12639499 |
tttggttatttttgtttacatggttactcttcgtggtcatggtatgattgaacctaatagggcttatttggaataccgtttggatgatttttc |
12639591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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