View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_21 (Length: 250)
Name: NF10599_low_21
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 18784660 - 18784413
Alignment:
| Q |
1 |
tagaaaaataaacaagggatttgaatgtaacattatttggtgttaccttgtttatatccacaagatatccaccaatcttactgaactctttcttgtaaac |
100 |
Q |
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| T |
18784660 |
tagaaaaataaacaagggatttgaatgtaacattatttagtgttaccttgtttatgtccactagatatccaccaatcttactgaactctttcttgtaaac |
18784561 |
T |
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| Q |
101 |
agtcataagtaaatcaattgcaccctaataaaatggagccaaacaattaagcataagtgatctatatatatattgaacttataaaactaaaggaaaaaat |
200 |
Q |
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| T |
18784560 |
agtcataagtaaatcaattgcatcctaataaaatggaaccaaacaattaaacataagtgatctatat--atattgaacttataaaactaaaggaaaaaat |
18784463 |
T |
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| Q |
201 |
gttagtaaatacctcgtgaatatacaaagacggcaagtgaggcagaaaat |
250 |
Q |
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| T |
18784462 |
gttactaaatacctcatgaatatacaaagacggcaagtgaggcagaaaat |
18784413 |
T |
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 22873219 - 22873152
Alignment:
| Q |
57 |
tccacaagatatccaccaatcttactgaactctttcttgtaaacagtcataagtaaatcaattgcacc |
124 |
Q |
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| T |
22873219 |
tccacaagatatcctccaagtctactgagctctttcttgtaaatagtcataagtaaatcaattgcacc |
22873152 |
T |
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