View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_27 (Length: 226)
Name: NF10599_low_27
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 19077743 - 19077549
Alignment:
| Q |
19 |
aaaattaactgattcatctgactataaagagtcattatctaaacgtgaatttctatcacattggttgtaattcacacttagcaaggacaaggaaaagttc |
118 |
Q |
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| T |
19077743 |
aaaattaactgattcatctgactataaagagttattatctaaacgtgaatttctatcacattggttgtaattcacgcttagcaaggacaaggaaaagttc |
19077644 |
T |
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| Q |
119 |
ttgaataatttt-cccatactcattttatcggaaatgattctccattatttatagaactttcctactttaaagctcattctaactattccctttg |
212 |
Q |
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| T |
19077643 |
ttgaataattttccccatactcattttatcggaaaggattctccattatttatagaactttcctactttaaagctcattctaactatttcctttg |
19077549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 19079468 - 19079274
Alignment:
| Q |
19 |
aaaattaactgattcatctgactataaagagtcattatctaaacgtgaatttctatcacattggttgtaattcacacttagcaaggacaaggaaaagttc |
118 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||| |
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| T |
19079468 |
aaaatgaactgattcatctgactatagagagtcattatctaaacgtgaatttctatcacattggttgtaattcacgcttagcaaggacaagcacaaattc |
19079369 |
T |
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| Q |
119 |
ttgaataatttt-cccatactcattttatcggaaatgattctccattatttatagaactttcctactttaaagctcattctaactattccctttg |
212 |
Q |
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|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19079368 |
ttgaattattttccccatactcattttatcggaaaagattctccattatttatagaactttcctactttaaagctcattctaactattccctttg |
19079274 |
T |
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