View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10599_low_28 (Length: 225)
Name: NF10599_low_28
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_28 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold1870 (1 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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| [»] scaffold0277 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 35985747 - 35985526
Alignment:
| Q |
4 |
ctaagcttactacaacctttggcactcaagactttaagtttatccaagaatccaactgactcatgaattgtaattaatttctcacaatattcaaatgaga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35985747 |
ctaagcttactacaacctttggcactcaagactttaagtttatccaagaatccaactgactcatgaattgtaattaatttctcacaatattcaaatgaga |
35985648 |
T |
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| Q |
104 |
atgtttctaaatttaagagagaagacacgtcaggcatttctgtcaaacaatctgcatcatcaaaattcaatatcttcatatttatgaacttttgcaaaat |
203 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35985647 |
atgtttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaattcaatatcttcatatttatgaacttttgcaaaat |
35985548 |
T |
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| Q |
204 |
aaataaagaaatgagaaccaaa |
225 |
Q |
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|||||||||||||||||||||| |
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| T |
35985547 |
aaataaagaaatgagaaccaaa |
35985526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 31907437 - 31907240
Alignment:
| Q |
4 |
ctaagcttactacaacctttggcactcaagactttaagtttatccaagaatccaactgactcatgaattgtaattaatttctcacaatattcaaatgaga |
103 |
Q |
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|||||||||| ||||||| |||||||||||| |||||||| |||||||| ||||| || || ||||||||| |||| |||| |||| || |||||| | |
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| T |
31907437 |
ctaagcttacggcaaccttgggcactcaagaccttaagtttttccaagaacccaaccgattcgtgaattgtagttaaattcttacaacgtttaaatgaaa |
31907338 |
T |
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| Q |
104 |
atgtttctaaatttaagagagaagacacgtcaggcatttctgtcaaacaatctgcatcatcaaaattcaatatcttcatatttatgaacttttgcaaa |
201 |
Q |
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|| |||||||||||| |||||||| ||||| |||||||| ||| | || || |||||||||||||| ||||||||||| | |||||| |||||| |
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| T |
31907337 |
ataattctaaatttaaaagagaagatgtatcaggtatttctgttaaaaattccgcgtcatcaaaattcaaaatcttcatattcaagaacttctgcaaa |
31907240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1870 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1870
Description:
Target: scaffold1870; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 1112 - 1062
Alignment:
| Q |
67 |
tgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
1112 |
tgaattgtaattaaattctcacaatattcaaaggagaacttttctaaattt |
1062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 9831 - 9781
Alignment:
| Q |
67 |
tgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
9831 |
tgaattgtaattaaattctcacaatattcaaaggagaacttttctaaattt |
9781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 2555 - 2605
Alignment:
| Q |
67 |
tgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
2555 |
tgaattgtaattaaattctcacaatattcaaaggagaacttttctaaattt |
2605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 5921222 - 5921317
Alignment:
| Q |
28 |
ctcaagactttaagtttatccaagaatccaactgactcatgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaatttaagaga |
123 |
Q |
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||||||| |||||||||| | || || ||||| || |||| ||||||||||| ||||||||||||| |||||| | | ||||||||||| |||| |
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| T |
5921222 |
ctcaagattttaagtttagctaacaacccaaccgagtcatccattgtaattaagttctcacaatattgaaatgaaagttcttctaaatttaggaga |
5921317 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 28125557 - 28125607
Alignment:
| Q |
67 |
tgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||||| || ||||||||| |||||||||| ||||||||||| |
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| T |
28125557 |
tgaattgtaattaaattatcacaatatgcaaatgagaacttttctaaattt |
28125607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 28130595 - 28130645
Alignment:
| Q |
67 |
tgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||||| || ||||||| |||||||||||| ||||||||||| |
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| T |
28130595 |
tgaattgtaattaaattatcacaattttcaaatgagaacttttctaaattt |
28130645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 27590847 - 27590897
Alignment:
| Q |
67 |
tgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||||| |||| ||||||||||||||| || ||||||||||| |
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| T |
27590847 |
tgaattgtaattaaattcttacaatattcaaatgataacttttctaaattt |
27590897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 13886296 - 13886377
Alignment:
| Q |
36 |
tttaagtttatccaagaatccaactgactcatgaattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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||||||||||| ||||||||||||||| ||||||||| | ||||| || | |||| | ||||||| ||| |||||||||| |
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| T |
13886296 |
tttaagtttattcaagaatccaactgattcatgaattttgattaaatttttgcaatttccaaatgataattcttctaaattt |
13886377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 26804810 - 26804762
Alignment:
| Q |
69 |
aattgtaattaatttctcacaatattcaaatgagaatgtttctaaattt |
117 |
Q |
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|||||||||||| ||||||||||||| ||| ||||| ||||||||||| |
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| T |
26804810 |
aattgtaattaaattctcacaatatttaaacgagaacttttctaaattt |
26804762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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