View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_30 (Length: 216)
Name: NF10599_low_30
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 28895523 - 28895352
Alignment:
| Q |
23 |
acgtacctttcacacaagaaaaaagtttgttacaatacaaattgtcttattcgatcgcttcacactccaaacgcaccactct---------------ctc |
107 |
Q |
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| T |
28895523 |
acgtacctttcacacaagaaaaaagtttgttacaatacaaattgtcttattcgatcgcttcacactccaaacgcaccactctctctttttttcctctctc |
28895424 |
T |
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| Q |
108 |
tatctctcaaattgaaataaatttacaccttcgtagtagtaaaacctttaaacgttcactacaaggtgctta |
179 |
Q |
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| T |
28895423 |
tctctctcaaattgaaatatatttacaccttcgtagtagtaaaacctttaaacgttcactacaaggtgctta |
28895352 |
T |
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