View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_4 (Length: 420)
Name: NF10599_low_4
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 42661876 - 42661492
Alignment:
| Q |
19 |
ggatgatggtatttaccgtgcaattgatatctacctcaaggttgcctactttctctatatgcttaatagtaaatatgcttcaaataataagaggatcaaa |
118 |
Q |
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| T |
42661876 |
ggatgatggtatttaccgtgcaattgatatctacctcaaggttgcctactttctctatatgcttaatagtaaata--------------agaggatcaaa |
42661791 |
T |
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| Q |
119 |
ttaataatatttgtctcataagatttaaagagatttgttttttcatttagtacacatg---tttcattggtaatttttagacagacactaacggaaaatt |
215 |
Q |
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| T |
42661790 |
ttaataatatttgtctcataagatttaaagagatttgttttt-catttagtacacatgatgtttcattggtaatttttagacagacactaacggaaaatt |
42661692 |
T |
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| Q |
216 |
atgaatttcagagccatgcatggatgacagaatctgagaaggaacaaatctgcaggctgatgaattgccagaaactctcattggaagcaagcacacacgc |
315 |
Q |
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| T |
42661691 |
atgaatttcagagccatgcatggatgacagaatctgagaaggaacaaatctgcaggctgatgaattgccagaaactctcattggaagcaagcacacacgc |
42661592 |
T |
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| Q |
316 |
agctcaaaacgaaaggctaccacttcgtgttgttgtccaagttttgttcttcgaacaactcaagctacgcacatctgttgcaggttggttctctgcttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42661591 |
agctcaaaacgaaaggctaccacttcgtgttgttgtccaagttttgttcttcgaacaactcaagctacgcacatctgttgcaggttggttctttgcttct |
42661492 |
T |
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