View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_5 (Length: 409)
Name: NF10599_low_5
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 130 - 393
Target Start/End: Complemental strand, 5224363 - 5224100
Alignment:
| Q |
130 |
tcctaacccaaaatccgaatcacaaaccgatccacaacccgaatcagaatcaccatccgcatcaagccccaccgcacgcggcgtcaaagacgacatctcc |
229 |
Q |
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| T |
5224363 |
tcctaacccaaaatccgaatcacaaaccgatccacagcccgaatcagaatcaccatccgcatcaagccccaccgcacgcggcgtcaaagacgacatctcc |
5224264 |
T |
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| Q |
230 |
gagctaacaaaatccttttcccgccaattctggggcgtcgcttctttcctagctccacctcccgatcacgatcacgattctaaaactcgcgattccgatc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5224263 |
gagctaacaaaatccttttcccgccaattctggggcgtcgcttctttcctagcaccacctcccgatcacgatcacgattctaaaactcgcgattccgatc |
5224164 |
T |
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| Q |
330 |
cgaatctcgctgatgaagatgttatcgctggaatccgaagcgattttgctgaaattagtggaaa |
393 |
Q |
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| T |
5224163 |
cgaatctcgctgatgaagatgttatcgctggaatccgaagcgattttgctgaaattagtggaaa |
5224100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 5915625 - 5915711
Alignment:
| Q |
19 |
ggatagagtagtaaaacagcaatatggattgtggcaagcaaaaacaaaatcgagaaaattgtgttgagagcagttgaggaggctcac |
105 |
Q |
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| T |
5915625 |
ggatagagtagtaaaacagcaatatggattgtggcaagcaaaaacaaaatcgagaaaattgtgttgagagcagttgaggaggctcac |
5915711 |
T |
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