View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10599_low_6 (Length: 407)

Name: NF10599_low_6
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10599_low_6
NF10599_low_6
[»] chr6 (6 HSPs)
chr6 (19-396)||(8816912-8817276)
chr6 (212-278)||(8420325-8420391)
chr6 (22-167)||(8420536-8420680)
chr6 (318-396)||(8419870-8419948)
chr6 (172-211)||(8596715-8596754)
chr6 (212-244)||(4247238-4247270)
[»] chr1 (1 HSPs)
chr1 (212-247)||(16322726-16322761)
[»] chr5 (2 HSPs)
chr5 (249-278)||(3951530-3951559)
chr5 (212-244)||(17777700-17777732)
[»] chr4 (2 HSPs)
chr4 (249-278)||(8469505-8469534)
chr4 (212-244)||(21043368-21043400)
[»] chr3 (1 HSPs)
chr3 (212-244)||(37308219-37308251)
[»] chr2 (1 HSPs)
chr2 (250-278)||(28803634-28803662)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 8816912 - 8817276
Alignment:
Q  19 aaattatccaataactattctagacctcgcaaaactcttagcaaattctaatcagattgcattacctaaatatttaatatccaggttcaaattcnnnnnn 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           
T  8816912 aaattatccaataactattctagacctcgcaaagctcttagcaaattctaatcagattgcattacctaaatatttaatatacaggttcaaattaaaaaaa 8817011  T
Q  119 n--ttatatagcaaattaaaacagaatacagatacatcatgttccattgttccaagttccaacaaccacgacttatccaacaactactctcaaaattggg 216  Q
       ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817012 aaattatatagcaaattaaaacagaatacagatacaccatgttccatttttccaagttccaacaaccacgacttatccaacaactactctcaaaattggg 8817111  T
Q  217 taaacaacttaattaagtgcttatagcacaaaagcataaatgcttatcatataagtgcttatcaaactctataacaacaaaaatctaaccacattgcatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||| ||||||||||||||||||||||||    
T  8817112 taaacaacttaattaagtgcttatagcacaaaagcataaa---------------tgcttatcaaactctataacgacaaaaatctaaccacattgcatt 8817196  T
Q  317 atatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttcat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817197 atatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttcat 8817276  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 8420391 - 8420325
Alignment:
Q  212 ttgggtaaacaacttaattaagtgcttatagcacaaaagcataaatgcttatcatataagtgcttat 278  Q
    ||||||||||| ||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  8420391 ttgggtaaacagcttaattaaatgcttatagcataaaggcatatatgcttatcatataagtgcttat 8420325  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 8420680 - 8420536
Alignment:
Q  22 ttatccaataactattctagacctcg-caaaactcttagcaaattctaatcagattgcattacctaaatatttaatatccaggttcaaattcnnnnnnnt 120  Q
    |||||||||||||||| ||||||||| |||||| |||  |||||||||| |||||||||||||  |||||||| ||||  ||||||  ||||            
T  8420680 ttatccaataactattatagacctcggcaaaacacttgtcaaattctaaccagattgcattactcaaatattt-atatataggttcttattcaaaaaag- 8420583  T
Q  121 tatatagcaaattaaaacagaatacagatacatcatgttccattgtt 167  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  8420582 tatatagcaaactaaaacataatacagagacatcatgttccattgtt 8420536  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 8419948 - 8419870
Alignment:
Q  318 tatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttcat 396  Q
    ||||||||||||||| |||||||  || | |||||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  8419948 tatcataaaattcaaaaacaatttcatccaaaaagtacaattctcttctgaaaagctatatatagcactgacacttcat 8419870  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 8596754 - 8596715
Alignment:
Q  172 gttccaacaaccacgacttatccaacaactactctcaaaa 211  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8596754 gttccaacaaccatgacttatccaacaactactctcaaaa 8596715  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 4247270 - 4247238
Alignment:
Q  212 ttgggtaaacaacttaattaagtgcttatagca 244  Q
    |||| ||||||||||||||||||||||||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagca 4247238  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 16322726 - 16322761
Alignment:
Q  212 ttgggtaaacaacttaattaagtgcttatagcacaa 247  Q
    |||| |||||||||||||||||||||||||||||||    
T  16322726 ttggataaacaacttaattaagtgcttatagcacaa 16322761  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 3951530 - 3951559
Alignment:
Q  249 agcataaatgcttatcatataagtgcttat 278  Q
    ||||||||||||||||||||||||||||||    
T  3951530 agcataaatgcttatcatataagtgcttat 3951559  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 17777700 - 17777732
Alignment:
Q  212 ttgggtaaacaacttaattaagtgcttatagca 244  Q
    |||||||||||||||||||||||| ||||||||    
T  17777700 ttgggtaaacaacttaattaagtgtttatagca 17777732  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 8469534 - 8469505
Alignment:
Q  249 agcataaatgcttatcatataagtgcttat 278  Q
    ||||||||||||||||||||||||||||||    
T  8469534 agcataaatgcttatcatataagtgcttat 8469505  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 21043400 - 21043368
Alignment:
Q  212 ttgggtaaacaacttaattaagtgcttatagca 244  Q
    |||||||||||||||||| ||||||||||||||    
T  21043400 ttgggtaaacaacttaatgaagtgcttatagca 21043368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 37308251 - 37308219
Alignment:
Q  212 ttgggtaaacaacttaattaagtgcttatagca 244  Q
    |||| ||||||||||||||||||||||||||||    
T  37308251 ttggataaacaacttaattaagtgcttatagca 37308219  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 28803662 - 28803634
Alignment:
Q  250 gcataaatgcttatcatataagtgcttat 278  Q
    |||||||||||||||||||||||||||||    
T  28803662 gcataaatgcttatcatataagtgcttat 28803634  T

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