View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10599_low_8 (Length: 393)
Name: NF10599_low_8
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10599_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 41070282 - 41070651
Alignment:
| Q |
17 |
aaaataagttaagagaccaaatttataatttaatctaaataaaaagagtgtaaaatgctggaaacattgacaaaattgttggaggggtatatgtcaaaca |
116 |
Q |
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| T |
41070282 |
aaaataagttaagagaccaaatttataatttaatctaaataaaa-gagtgtaaaatgctggaaacattgaggaaattgttggaggggtatatgtcaaaca |
41070380 |
T |
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| Q |
117 |
tatacttcatctataaaacaa-ttacttagaatttatcaagctctcaacccaaccattatgggttgcatgggattatattttgatctctttatcacctta |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41070381 |
tatacttcatctataaaacaaattacttagaatttatcaagctctcaacccaaccattatgggttgcatgggattatattttgatctctttatcacctta |
41070480 |
T |
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| Q |
216 |
aatgataaagagattcaacacttctaaccatcatgaaatacaggtcaatcagttcagtccattaggccaggccaaattcaacacctctaaccaataaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41070481 |
aatgataaagagattcaacacttctaaccatcatgaaatacaggtcaataagttcagtccattaggccaggccaaattcaacacctctaaccaataaata |
41070580 |
T |
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| Q |
316 |
tacttgctcatgctcttgccagaccaactcacttgtgccccacgttagtttttgacatatacttcatctct |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41070581 |
tacttgctcatgctcttgccagaccaactcacttgtgccccacgttagtttttgacatatacttcatctct |
41070651 |
T |
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