View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10599_low_9 (Length: 393)

Name: NF10599_low_9
Description: NF10599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10599_low_9
NF10599_low_9
[»] chr8 (10 HSPs)
chr8 (78-266)||(15619317-15619505)
chr8 (78-274)||(15653872-15654068)
chr8 (78-272)||(27535998-27536192)
chr8 (78-266)||(15642534-15642722)
chr8 (280-379)||(8163895-8163994)
chr8 (276-379)||(14672499-14672602)
chr8 (276-363)||(33686215-33686302)
chr8 (277-371)||(35351293-35351387)
chr8 (316-368)||(27535438-27535493)
chr8 (300-337)||(14672654-14672691)
[»] chr5 (7 HSPs)
chr5 (78-274)||(22003189-22003388)
chr5 (273-379)||(9044892-9044998)
chr5 (273-379)||(7472434-7472540)
chr5 (273-379)||(30442822-30442928)
chr5 (273-379)||(22002978-22003084)
chr5 (273-379)||(32871947-32872053)
chr5 (273-379)||(30441522-30441627)
[»] chr7 (7 HSPs)
chr7 (273-379)||(43070308-43070414)
chr7 (273-379)||(26906693-26906799)
chr7 (273-379)||(14231967-14232074)
chr7 (273-379)||(48847141-48847247)
chr7 (273-379)||(1264691-1264797)
chr7 (146-266)||(23483166-23483284)
chr7 (329-379)||(13764791-13764841)
[»] chr2 (9 HSPs)
chr2 (273-379)||(23347906-23348012)
chr2 (273-379)||(18354233-18354339)
chr2 (276-379)||(12742734-12742837)
chr2 (274-365)||(30015551-30015642)
chr2 (274-365)||(30074648-30074739)
chr2 (277-371)||(30045029-30045119)
chr2 (277-371)||(30050192-30050282)
chr2 (277-371)||(30141236-30141326)
chr2 (297-373)||(9211537-9211613)
[»] chr3 (19 HSPs)
chr3 (273-379)||(37984840-37984946)
chr3 (273-379)||(31687625-31687732)
chr3 (273-379)||(17689424-17689530)
chr3 (276-379)||(24758914-24759017)
chr3 (276-379)||(24767911-24768014)
chr3 (276-379)||(24813124-24813227)
chr3 (276-379)||(24826997-24827100)
chr3 (273-379)||(53024820-53024925)
chr3 (279-379)||(19769654-19769754)
chr3 (276-379)||(33648273-33648376)
chr3 (277-373)||(47761408-47761504)
chr3 (276-355)||(24129219-24129298)
chr3 (314-379)||(12531324-12531390)
chr3 (297-379)||(11396607-11396689)
chr3 (297-373)||(32790965-32791041)
chr3 (327-379)||(53352085-53352136)
chr3 (297-343)||(46231022-46231068)
chr3 (300-337)||(24129350-24129387)
chr3 (278-319)||(49718166-49718207)
[»] scaffold0035 (1 HSPs)
scaffold0035 (276-379)||(37043-37146)
[»] chr6 (4 HSPs)
chr6 (273-379)||(21999290-21999396)
chr6 (273-379)||(31891408-31891514)
chr6 (277-379)||(25169625-25169727)
chr6 (297-379)||(22681779-22681861)
[»] chr4 (5 HSPs)
chr4 (276-379)||(29861393-29861496)
chr4 (274-379)||(24262546-24262651)
chr4 (277-331)||(38465799-38465853)
chr4 (300-337)||(29861548-29861585)
chr4 (309-379)||(17404881-17404951)
[»] chr1 (3 HSPs)
chr1 (277-379)||(25226742-25226844)
chr1 (297-379)||(32437605-32437687)
chr1 (12-68)||(6773221-6773277)
[»] scaffold0045 (1 HSPs)
scaffold0045 (273-379)||(10240-10346)
[»] scaffold0096 (1 HSPs)
scaffold0096 (314-376)||(32507-32572)
[»] scaffold0003 (1 HSPs)
scaffold0003 (329-379)||(33612-33662)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 15619505 - 15619317
Alignment:
Q  78 ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg 177  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||    
T  15619505 ttagtctaaagacttgggatgtttgtattatgtatctttatttgtaatctctttagttttttcttgtgttgtgttttgtactttccagtagaaatatatg 15619406  T
Q  178 atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta 266  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15619405 atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta 15619317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 15654068 - 15653872
Alignment:
Q  78 ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg 177  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||||    
T  15654068 ttagtctaaagacttgggatgtttgtattatgtatctttatttgtaatctctttagttttttcctatgttgtgttttgtaatttccagtagaaatatatg 15653969  T
Q  178 atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacaacttca 274  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15653968 atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgaatttctcagctgctttggtacagcttca 15653872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 78 - 272
Target Start/End: Complemental strand, 27536192 - 27535998
Alignment:
Q  78 ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg 177  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  27536192 ttagtctaaagacttgggatgtttgtattatgtatctttatttgtaatctctttagttttttcctgtgttgtgttttgtaatttccagtagaaatatatg 27536093  T
Q  178 atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacaactt 272  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||    
T  27536092 atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagattataatttagtatccgattttctcagctgctttggtaaaactt 27535998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 15642722 - 15642534
Alignment:
Q  78 ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg 177  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||    
T  15642722 ttagtctaaagacttgggatgtttgtattatgtatatttatttgtaatctctttagttttttcttgtgttgtgttttgtactttccagtagaaatatatg 15642623  T
Q  178 atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta 266  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642622 atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta 15642534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 280 - 379
Target Start/End: Original strand, 8163895 - 8163994
Alignment:
Q  280 atgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8163895 atgttgcaatatcacgtgttacatcaagggatggtttgaagatattattaacggatgacaatggggattatatcagcaccacttcaaatgtagtttataa 8163994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 14672602 - 14672499
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14672602 ctatatgttgcaatatcacgtgttacatcaagagatggtctgaaaatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttt 14672503  T
Q  376 ataa 379  Q
    ||||    
T  14672502 ataa 14672499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 33686302 - 33686215
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccactt 363  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  33686302 ctatatgttgcaatatcacgtgttacatcaagagatggtttgaagatattattaacggatgacgatggggattgtatcaacactactt 33686215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 371
Target Start/End: Original strand, 35351293 - 35351387
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgta 371  Q
    ||||||||||| ||||||   ||||||||||||||||||| ||||||||| |||| |||| ||| |||||||| |||    ||||||||||||||    
T  35351293 tatatgttgcagtatcacaccttacatcaagggatggtcttaagatattactaactgatggcaacggggattgcatcgatgccacttcaaatgta 35351387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 27535493 - 27535438
Alignment:
Q  316 tgaagatattattaacg---gatgacaatggggattgtatcagcaccacttcaaat 368  Q
    |||||||||||||||||   |||||||||| |||||||||||||||||||||||||    
T  27535493 tgaagatattattaacgacggatgacaatgaggattgtatcagcaccacttcaaat 27535438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 14672691 - 14672654
Alignment:
Q  300 acatcaagggatggtctgaagatattattaacggatga 337  Q
    |||||||||||||||||||||||||||||||| |||||    
T  14672691 acatcaagggatggtctgaagatattattaacagatga 14672654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 22003388 - 22003189
Alignment:
Q  78 ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg 177  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  22003388 ttagtctaaagacttgggatgtttgtattatgcatctttatttgcaatctctttagttttttcctgtgttgtgttttgtaatttccagtagaaatatatg 22003289  T
Q  178 atggatcaa---atgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacaacttca 274  Q
    |||||||||   || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22003288 atggatcaagtgatcatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacagcttca 22003189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 9044892 - 9044998
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9044892 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 9044991  T
Q  373 tttataa 379  Q
    |||||||    
T  9044992 tttataa 9044998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 7472540 - 7472434
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7472540 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggagattgtatcagcaccacttcaaatgtag 7472441  T
Q  373 tttataa 379  Q
    |||||||    
T  7472440 tttataa 7472434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 30442928 - 30442822
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  30442928 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttcaaatgtag 30442829  T
Q  373 tttataa 379  Q
    |||||||    
T  30442828 tttataa 30442822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 22003084 - 22002978
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22003084 cagctatatgttgcaatatcacgcgttacatcaagggatagtctgaagatattattaacggataacaatggggattgtatcagcaccacttcaaatgtag 22002985  T
Q  373 tttataa 379  Q
    |||||||    
T  22002984 tttataa 22002978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 32871947 - 32872053
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  32871947 cagctatatgttgcaatatcacgtgttacatcaagggatggtatgaagatattattaacaaatgacaatggggattgtatcagcgccacttcaaatgtag 32872046  T
Q  373 tttataa 379  Q
    |||||||    
T  32872047 tttataa 32872053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 30441627 - 30441522
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30441627 cagctatatgttgcagtatcacgtgtgacatcaagggatggtctgaagaaattattaacggatgacaat-gggattgtatcagcaccacttcaaatgtag 30441529  T
Q  373 tttataa 379  Q
    |||||||    
T  30441528 tttataa 30441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 43070414 - 43070308
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070414 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 43070315  T
Q  373 tttataa 379  Q
    |||||||    
T  43070314 tttataa 43070308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 26906799 - 26906693
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  26906799 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggagattgtatcaacaccatttcaaatgtag 26906700  T
Q  373 tttataa 379  Q
    |||||||    
T  26906699 tttataa 26906693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 14231967 - 14232074
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaaggg-atggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgta 371  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  14231967 cagctatatgttgcaatatcacgtgttacatcaaggggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttcaaatgta 14232066  T
Q  372 gtttataa 379  Q
    ||||||||    
T  14232067 gtttataa 14232074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 48847247 - 48847141
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||    
T  48847247 cagctatatgttgcaatatcatgtgttacatcaagggatggtctgaagatattattaacatatgacaatgaggattgtattagcaccacttcaaatgtag 48847148  T
Q  373 tttataa 379  Q
    |||||||    
T  48847147 tttataa 48847141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 1264691 - 1264797
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||||    
T  1264691 cagctatatgttgcaatatcatgtgttacatcaagggatggtctgaagatattattaacatatgacaatgaggattgtattagcaccacttcaaatgtag 1264790  T
Q  373 tttataa 379  Q
     ||||||    
T  1264791 cttataa 1264797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 23483284 - 23483166
Alignment:
Q  146 ttgtgttttgcaatttccagtataaatatatgatggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccg 245  Q
    ||||||||| ||||||||||||  ||||||||||||||||| ||||  || || ||||||||||  ||||||||||||||||| |||||||||||||| |    
T  23483284 ttgtgtttttcaatttccagtagcaatatatgatggatcaagtgat--gcatttagttgataatcgaaatataaattggaagagtaaaatttagtatctg 23483187  T
Q  246 attttctcagctgctttggta 266  Q
    |||||||||||||||||||||    
T  23483186 attttctcagctgctttggta 23483166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 13764791 - 13764841
Alignment:
Q  329 aacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||||||||||  |||| ||||| |||||||||||||||||| |||||    
T  13764791 aacggatgacaatgaagattatatcaacaccacttcaaatgtagtgtataa 13764841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 23348012 - 23347906
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348012 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 23347913  T
Q  373 tttataa 379  Q
    |||||||    
T  23347912 tttataa 23347906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 18354339 - 18354233
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18354339 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggagattgtatcagcaccacttcaaatgtag 18354240  T
Q  373 tttataa 379  Q
    |||||||    
T  18354239 tttataa 18354233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 12742734 - 12742837
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  12742734 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatgggaattatatcagcaccacttcaaatgtagttt 12742833  T
Q  376 ataa 379  Q
    ||||    
T  12742834 ataa 12742837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 30015551 - 30015642
Alignment:
Q  274 agctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttca 365  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  30015551 agctatatgttgcaatatcacgtgttacatcaagagatggtttgaagatattattaatggatgacaatggggattgtatcaacaccacttca 30015642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 30074648 - 30074739
Alignment:
Q  274 agctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttca 365  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  30074648 agctatatgttgcaatatcacgtgttacatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 30074739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 371
Target Start/End: Complemental strand, 30045119 - 30045029
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgta 371  Q
    |||||| ||||||||||||||    ||||||  ||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  30045119 tatatgctgcaatatcacgtg----atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttcaaatgta 30045029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 371
Target Start/End: Complemental strand, 30050282 - 30050192
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgta 371  Q
    |||||| ||||||||||||||    ||||||  ||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  30050282 tatatgctgcaatatcacgtg----atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttcaaatgta 30050192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 371
Target Start/End: Complemental strand, 30141326 - 30141236
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgta 371  Q
    |||||| ||||||||||||||    ||||||  ||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  30141326 tatatgctgcaatatcacgtg----atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttcaaatgta 30141236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 9211537 - 9211613
Alignment:
Q  297 gttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagt 373  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||| ||| ||||    |||||||||| |||||||    
T  9211537 gttacattaagagatggtctgaagatattattaacgcatgacaatgaggactgtaattacaccacttcatatgtagt 9211613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 37984840 - 37984946
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37984840 cagctatatgttgcaatatcacgtgttacatcaagggatgatctgaagatattattaacggatgacattggggattgtatcagcaccacttcaaatgtag 37984939  T
Q  373 tttataa 379  Q
    |||||||    
T  37984940 tttataa 37984946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 31687625 - 31687732
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaaga-tattattaacggatgacaatggggattgtatcagcaccacttcaaatgta 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  31687625 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagattattattaacatatgacaatggggattgtatcagcaccacttcaaatgta 31687724  T
Q  372 gtttataa 379  Q
    ||||||||    
T  31687725 gtttataa 31687732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 17689424 - 17689530
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  17689424 cagctatatgttgcaatatcacatgttacatcaagggatggtctgaagatattattaacagatgacaatggggattatatcagcaccatttcaaatgtag 17689523  T
Q  373 tttataa 379  Q
    |||||||    
T  17689524 tttataa 17689530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 24759017 - 24758914
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||    
T  24759017 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgtagttt 24758918  T
Q  376 ataa 379  Q
    ||||    
T  24758917 ataa 24758914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 24768014 - 24767911
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||    
T  24768014 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgtagttt 24767915  T
Q  376 ataa 379  Q
    ||||    
T  24767914 ataa 24767911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 24813124 - 24813227
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||    
T  24813124 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgtagttt 24813223  T
Q  376 ataa 379  Q
    ||||    
T  24813224 ataa 24813227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 24826997 - 24827100
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||    
T  24826997 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgtagttt 24827096  T
Q  376 ataa 379  Q
    ||||    
T  24827097 ataa 24827100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 53024925 - 53024820
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| | |||||||||||||||||    
T  53024925 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatatta-taacgaatgacaatggagattgtattaacaccacttcaaatgtag 53024827  T
Q  373 tttataa 379  Q
    |||||||    
T  53024826 tttataa 53024820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 19769654 - 19769754
Alignment:
Q  279 tatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttata 378  Q
    |||||||||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19769654 tatgttgcaatatcacgtgttacaacaagggataatctaaagatattattaacggatgacaatggagattgtatcagcaccacttcaaatgtagtttata 19769753  T
Q  379 a 379  Q
    |    
T  19769754 a 19769754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 33648376 - 33648273
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||||    
T  33648376 ctatatgttgcaatatcacatgttacgtcaagggatggtctgaagatattattaacggatgacaatggggataatattaacaccacttcaaatgtagttt 33648277  T
Q  376 ataa 379  Q
    ||||    
T  33648276 ataa 33648273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 47761504 - 47761408
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagt 373  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||    
T  47761504 tatatgttgcaatctcacgtgttacatcaagagatcgtctgaacatattatcaacggatgacaatagggattgtatcaacaccacttcaaatgtagt 47761408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 24129298 - 24129219
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcag 355  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  24129298 ctatatgttgcaatattacgtgttacatcaagggatggtctgaatatattatcaacagatgacaatggggattgtatcag 24129219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 12531390 - 12531324
Alignment:
Q  314 tctgaagatattattaacggatgacaatggggattgtatcagcaccac-ttcaaatgtagtttataa 379  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12531390 tctgaagatattactaacggatgacaatggggattgtatcagcaccactttcaaatgtagtttataa 12531324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 11396607 - 11396689
Alignment:
Q  297 gttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||    |||||||||||| ||||| |||||    
T  11396607 gttacattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttcaaacgtagtgtataa 11396689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 32791041 - 32790965
Alignment:
Q  297 gttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagt 373  Q
    ||||||| ||| |||||| ||||||||||||||||| ||||||||| ||| ||||    ||||||||||||||||||    
T  32791041 gttacattaagagatggtttgaagatattattaacgcatgacaatgaggagtgtaattacaccacttcaaatgtagt 32790965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 53352136 - 53352085
Alignment:
Q  327 ttaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||||||| ||||| |||||||| | ||||||||||||||||||||||||    
T  53352136 ttaacggatga-aatggagattgtattaacaccacttcaaatgtagtttataa 53352085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 46231068 - 46231022
Alignment:
Q  297 gttacatcaagggatggtctgaagatattattaacggatgacaatgg 343  Q
    ||||||| ||| |||||||||||||||||||||||| || |||||||    
T  46231068 gttacattaagagatggtctgaagatattattaacgcataacaatgg 46231022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 24129387 - 24129350
Alignment:
Q  300 acatcaagggatggtctgaagatattattaacggatga 337  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  24129387 acatcaagggattgtctgaagatattattaacagatga 24129350  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 49718207 - 49718166
Alignment:
Q  278 atatgttgcaatatcacgtgttacatcaagggatggtctgaa 319  Q
    |||||||||||| ||||||||||||  |||||||||||||||    
T  49718207 atatgttgcaatctcacgtgttacactaagggatggtctgaa 49718166  T

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Target: scaffold0035 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 37043 - 37146
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37043 ctatatgttgcaatatcacgtgttatatcaagggatggtctgaagatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttt 37142  T
Q  376 ataa 379  Q
    ||||    
T  37143 ataa 37146  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 21999396 - 21999290
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21999396 cagctatatattgcaatatcacgtgttacatcaagggatggtatgaagatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtag 21999297  T
Q  373 tttataa 379  Q
    |||||||    
T  21999296 tttataa 21999290  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 31891514 - 31891408
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||    
T  31891514 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacatatgacaatggggattgtatcagtaccacttcaaatatag 31891415  T
Q  373 tttataa 379  Q
    |||||||    
T  31891414 tttataa 31891408  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 379
Target Start/End: Original strand, 25169625 - 25169727
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttta 376  Q
    ||||||||||| |||||||||||||||||||||||||| |||| ||||||||    ||||| || |||||||| ||| ||||||||||||||||||| ||    
T  25169625 tatatgttgcagtatcacgtgttacatcaagggatggtttgaaaatattattgtatgatgaaaacggggattgcatcggcaccacttcaaatgtagtcta 25169724  T
Q  377 taa 379  Q
    |||    
T  25169725 taa 25169727  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 22681779 - 22681861
Alignment:
Q  297 gttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||    |||||||||||||||||| |||||    
T  22681779 gttacattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttcaaatgtagtgtataa 22681861  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 29861496 - 29861393
Alignment:
Q  276 ctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttt 375  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29861496 ctatatgttgcaatatcacgtgttacatcaagagatggtctgaaaatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttt 29861397  T
Q  376 ataa 379  Q
    ||||    
T  29861396 ataa 29861393  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 24262546 - 24262651
Alignment:
Q  274 agctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagt 373  Q
    |||||||||||||||| ||||||||| ||||||| |||| ||| |||||||||||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  24262546 agctatatgttgcaatctcacgtgttgcatcaagagatgatctaaagatattattaacagatgacaatgatgattgtatcaacaccacttcaaatgtagt 24262645  T
Q  374 ttataa 379  Q
     |||||    
T  24262646 atataa 24262651  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 38465853 - 38465799
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaac 331  Q
    ||||||||||| ||||||  |||||||||||||||||||| ||||||||| ||||    
T  38465853 tatatgttgcagtatcacacgttacatcaagggatggtctaaagatattactaac 38465799  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 29861585 - 29861548
Alignment:
Q  300 acatcaagggatggtctgaagatattattaacggatga 337  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29861585 acatcaagggatggtctgaagatattattaacagatga 29861548  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 17404951 - 17404881
Alignment:
Q  309 gatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||||||||||||||||| || ||||||||||||| | ||    ||||||||||||||| || |||||    
T  17404951 gatggtctgaagatattattagcgcatgacaatggggactataattacaccacttcaaatgttgtgtataa 17404881  T

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Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 277 - 379
Target Start/End: Original strand, 25226742 - 25226844
Alignment:
Q  277 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttta 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||    
T  25226742 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttcaaatgtaattta 25226841  T
Q  377 taa 379  Q
    |||    
T  25226842 taa 25226844  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 32437687 - 32437605
Alignment:
Q  297 gttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||    |||||||||||||||||| |||||    
T  32437687 gttacattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttcaaatgtagtgtataa 32437605  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 6773277 - 6773221
Alignment:
Q  12 agagaacagtagatatgtacctttttatgaacaataagactctttttgagactgtga 68  Q
    |||||||| | |||||||||||||||||||||| ||||  ||| ||| |||||||||    
T  6773277 agagaacaatggatatgtacctttttatgaacagtaaggttctgtttaagactgtga 6773221  T

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Target: scaffold0045 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 10346 - 10240
Alignment:
Q  273 cagctatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtatcagcaccacttcaaatgtag 372  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  10346 cagctatatgttgcgatatcacgtgttacatcaaggaatggtctgaagatattattaacggataacaatgaggattgtatcagcaccacctcaaatgtag 10247  T
Q  373 tttataa 379  Q
    |||||||    
T  10246 tttataa 10240  T

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Target: scaffold0096 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 32507 - 32572
Alignment:
Q  314 tctgaagatattattaacg---gatgacaatggggattgtatcagcaccacttcaaatgtagttta 376  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  32507 tctgaagatattattaacgacagatgacaatggggattgtatcagcaccacttcaaatgtagttta 32572  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 33662 - 33612
Alignment:
Q  329 aacggatgacaatggggattgtatcagcaccacttcaaatgtagtttataa 379  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||| |||||    
T  33662 aacggatgacaatggagattatatcaacaccacttcaaatgtagtatataa 33612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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