View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_high_1 (Length: 398)
Name: NF10600_high_1
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 7559502 - 7559877
Alignment:
| Q |
18 |
gttgataggttgctaaactcgaaccggataaatgacaacgaatcaaatttggtgagtctataatgcaacaatggtatcttttcttaatcttctggttctt |
117 |
Q |
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| T |
7559502 |
gttgataggttgctaaactcgaaccggataaatgacaacgaatcaaatttggtgagtctataatgcaacaatggtatcttttcttaatcttctggttctt |
7559601 |
T |
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| Q |
118 |
aggaaacaaacccaggtactaccggtcgattaaccttaacaaaagctcgttaaccccttaaactcaaccccttgattcaacaacggcagaatgcaacaag |
217 |
Q |
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| T |
7559602 |
aggaaacaaacccaggtactaccggtcgattaaccttaacaaaagctcgttaaccccttaaactcaaccccttgattcaacaacggcagaatgcaacaag |
7559701 |
T |
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| Q |
218 |
acaattgcttcgaagatataaagatttggtggtatctttattgacatttaccaattttcaatgtcaatcataattagtcttccgatgcatgtgttctaac |
317 |
Q |
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| T |
7559702 |
acaattgcttcgaagatataaagatttggtggtatctttattgacatttaccaattttcaatgtcaatcataattagtcttccgatgcatgtgttctaac |
7559801 |
T |
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| Q |
318 |
tttcacccgttcaccattgaagtgaatatacttccatttaaggccatatcgttttattaccagttttcttctctct |
393 |
Q |
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| T |
7559802 |
tttcacccgttcaccattgaagtgaatatacttccatttaaggccatatcgttttattaccagttttcttttctct |
7559877 |
T |
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