View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_high_2 (Length: 249)
Name: NF10600_high_2
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 11420376 - 11420141
Alignment:
| Q |
5 |
cgtttcatctgtgggtgtttaatgaaataatattttgttgattaaatgtaaatgataaatacacatgtaaatgatatagagggggttagtctagcaatat |
104 |
Q |
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| T |
11420376 |
cgtttcatctgtgggtgtttaatgaaataatattttgttgattaaatgtaaatgataaatacacatataaatgatatagagggggttagtctagcaatat |
11420277 |
T |
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| Q |
105 |
gataaaggtaaaagaaaataaaagagtaaatgatatatacacatgtgaaatgtgattaagaacacaaatgaaaggtacatgctggattgaaaatgatctt |
204 |
Q |
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| T |
11420276 |
gataaagttaaaagaaaataaaagagtaaatgatatacacacatgtcatatgtgattaagaacacaaatgaaaggtacatgctggattgaaaatgatctt |
11420177 |
T |
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| Q |
205 |
acatgatctctgatgtttttgtttagggcctctctg |
240 |
Q |
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| T |
11420176 |
acatgctctctggtgtttttgtttagggcctctctg |
11420141 |
T |
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