View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_high_3 (Length: 239)
Name: NF10600_high_3
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11420512 - 11420740
Alignment:
| Q |
1 |
tatttttatgttgttcattcaagtatttttctatgcgttaagtgtgtggatgaatattaaaaattgtgctcaaatgatacatacgcaaatgtgtgttgta |
100 |
Q |
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| T |
11420512 |
tatttttatgttgttgattcaagtatttttctatgcgttaagtgtgtggatgcatattaaaaattgtgctcaaatgatacatacgcaaatgtgtgtggta |
11420611 |
T |
|
| Q |
101 |
aaacggatttactaacttaacac----------acccatgatgcttgaagtgtgatttagaagtttcatattaaatgtaaaagtaaatgtttaataacat |
190 |
Q |
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| T |
11420612 |
aaacggatttactaacttaacacattattatgtacccatgatgcttgaagtgtgatttagaagtttcatattaaatgtaaaagtaaatgtttaataacat |
11420711 |
T |
|
| Q |
191 |
atgagtaatatgattcacatacacaatgt |
219 |
Q |
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||| ||||||||||||| ||||||||||| |
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| T |
11420712 |
atgggtaatatgattcatatacacaatgt |
11420740 |
T |
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