View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_low_3 (Length: 393)
Name: NF10600_low_3
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 25064071 - 25064276
Alignment:
| Q |
19 |
aactctacttagaataacaacttagggctatttcaagacttttcaacttactaacttctactaactcttactactctaattaacctatactctatatccc |
118 |
Q |
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| T |
25064071 |
aactctacttagaataacaacttagggctatttcaagacttttcaacttactaacttctactaactcttactactctaattaacctatactctatatccc |
25064170 |
T |
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| Q |
119 |
aacacac---aatgtggcaattcttgcactcaggaaaaatcaatttggtcctctacaaaacagaaattagtttacacatataaactcttggaactttaaa |
215 |
Q |
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| T |
25064171 |
aacacacaataatgtggcaattcttgcactcagaaaaaatcaatttggtcctctacaaaacagaaattagtttacacatataaactcttggaactttaaa |
25064270 |
T |
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| Q |
216 |
atagac |
221 |
Q |
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|||||| |
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| T |
25064271 |
atagac |
25064276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 25064293 - 25064421
Alignment:
| Q |
246 |
aactaaatgaaatacatagcattttaagtaaagccttgaactttcagttctaa---ttttttctttctttctggcattagcataattttagttgtagcaa |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25064293 |
aactaaatgaaatacatagcattttaagtaaagccttgaactttcagttctaatttttttttctttc-ttctggcattagcataattttagttgtagcaa |
25064391 |
T |
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| Q |
343 |
gagaatgatttgattctgcagaagagaaca |
372 |
Q |
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|||||||||||| ||||||||||||||||| |
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| T |
25064392 |
gagaatgatttgcttctgcagaagagaaca |
25064421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 45571661 - 45571716
Alignment:
| Q |
68 |
actaacttctactaactctta-ctactctaattaacctatactctatatcccaaca |
122 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
45571661 |
actaacttctactaagtcttaactactctaattaacctatactctatatcctaaca |
45571716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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