View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10600_low_4 (Length: 321)

Name: NF10600_low_4
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10600_low_4
NF10600_low_4
[»] chr4 (6 HSPs)
chr4 (40-284)||(37211268-37211515)
chr4 (105-265)||(36102853-36103013)
chr4 (97-187)||(14032633-14032723)
chr4 (159-279)||(6831204-6831324)
chr4 (197-275)||(4459617-4459695)
chr4 (197-275)||(4458879-4458957)
[»] chr2 (5 HSPs)
chr2 (116-275)||(5275937-5276096)
chr2 (97-187)||(18581792-18581882)
chr2 (97-187)||(38697929-38698019)
chr2 (204-275)||(18581719-18581790)
chr2 (204-275)||(38698021-38698092)
[»] scaffold0103 (1 HSPs)
scaffold0103 (97-251)||(1178-1328)
[»] chr6 (4 HSPs)
chr6 (97-251)||(2638681-2638831)
chr6 (117-254)||(12242230-12242367)
chr6 (73-196)||(12623781-12623909)
chr6 (197-273)||(31278622-31278698)
[»] chr7 (6 HSPs)
chr7 (97-187)||(15679140-15679230)
chr7 (136-253)||(6532888-6533005)
chr7 (97-188)||(12380400-12380491)
chr7 (200-275)||(24912650-24912724)
chr7 (204-279)||(15679063-15679138)
chr7 (202-251)||(12380490-12380539)
[»] chr3 (7 HSPs)
chr3 (97-187)||(30378041-30378131)
chr3 (97-187)||(1419036-1419126)
chr3 (198-275)||(31516648-31516725)
chr3 (117-266)||(2602366-2602515)
chr3 (197-275)||(15488623-15488701)
chr3 (204-275)||(1418963-1419034)
chr3 (204-275)||(30378133-30378204)
[»] chr1 (6 HSPs)
chr1 (97-187)||(9957752-9957842)
chr1 (105-187)||(32178000-32178082)
chr1 (97-222)||(42050375-42050500)
chr1 (164-236)||(8360485-8360557)
chr1 (204-275)||(9957844-9957915)
chr1 (240-273)||(37314153-37314186)
[»] scaffold0552 (1 HSPs)
scaffold0552 (159-279)||(10706-10826)
[»] chr5 (2 HSPs)
chr5 (97-173)||(41870538-41870614)
chr5 (217-271)||(31534843-31534897)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 40 - 284
Target Start/End: Original strand, 37211268 - 37211515
Alignment:
Q  40 cccatcaagtgctttgttacatttttactaagcgagccatacaaaa---acttggaaaattcatgagaatgaaaatggagaaattgattataattcaagt 136  Q
    |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37211268 cccatcaagtgctttgttacatttttactaagcgagacatacaaaaaaaacttggaaaattcatgaaaatgaaaatggagaaattgattataattcaagt 37211367  T
Q  137 gttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatacttatgatccatgaaattggg 236  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  37211368 gttcttaatgatgtggcaaatgcatccaatattgaaaaatatggtgatgattatgaaaaagaaatttctcattctgatacttatgatccgtgaaattggg 37211467  T
Q  237 aaaatcttgataacaaattaaatgatattctagttgaaaggggtctat 284  Q
    | |||||||||||||||| |||||||||| |||||||||||| |||||    
T  37211468 agaatcttgataacaaatcaaatgatattttagttgaaagggatctat 37211515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 36102853 - 36103013
Alignment:
Q  105 atgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaagaaatttc 204  Q
    |||||||||  ||||||| | |||||| |||| ||| |||||||||| |||||| ||| |||||||||||   ||||||||||||| ||||  |||||||    
T  36102853 atgaaaatgaggaaattggtcataattaaagtattcttaatgatgtgccaaatgtatctaatattgaaaattttggtgatgattatgaaaacaaaatttc 36102952  T
Q  205 tcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatatt 265  Q
    ||||| ||||| ||||||| || ||||||| || |||||| ||||||| | |||| |||||    
T  36102953 tcattttgatatttatgattcaagaaattgagagaatcttaataacaactcaaattatatt 36103013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 14032723 - 14032633
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  |||||||||||   ||||||||||    
T  14032723 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaaattttggtgatgat 14032633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 6831324 - 6831204
Alignment:
Q  159 catccaatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaa 258  Q
    |||| ||||||||||| | |  |||||||||| || || ||||| |||||| ||||| |||| ||||| | |||||||| |||||||| ||||||| |||    
T  6831324 catctaatattgaaaatcttaatgatgattatgaacaaaaaattcctcattttgatatttataatccaaggaattgggagaatcttgaaaacaaataaaa 6831225  T
Q  259 tgatattctagttgaaagggg 279  Q
     |||||| |||||||||||||    
T  6831224 ggatattatagttgaaagggg 6831204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 4459695 - 4459617
Alignment:
Q  197 gaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| |||||| |||||  |||||||||||||||||||| |||||||| |||| || ||  ||||||||||||||||    
T  4459695 gaaattgctcattttgatatatatgatccatgaaattgggagaatcttgagaacatatcaagggatattctagttgaaa 4459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 4458879 - 4458957
Alignment:
Q  197 gaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| |||| | ||||| ||||||| ||||||||||||| ||||| |||||||  | ||| ||||||||||||||||    
T  4458879 gaaattgctcaatttgatatttatgattcatgaaattgggagaatctcgataacacgtcaaaggatattctagttgaaa 4458957  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 275
Target Start/End: Original strand, 5275937 - 5276096
Alignment:
Q  116 gaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattatta-aaaagaaatttctcattctgat 214  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||  |||| | |||| |||| ||||||| ||||    
T  5275937 gaaattgatgataattcaagtgttcctaatgatgtgccaaatgcatctaatattcaaaatcatggtgattgttataacaaaaaaaatctctcattttgat 5276036  T
Q  215 acttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    | ||| ||||||  ||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  5276037 atttaagatcca-aaaattgggagaatcttgataacaatttaaaggatattctagttgaaa 5276096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 18581882 - 18581792
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  |||||||||||   ||||||||||    
T  18581882 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaaattttggtgatgat 18581792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 38697929 - 38698019
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  |||||||||||   ||||||||||    
T  38697929 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaaattttggtgatgat 38698019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 18581790 - 18581719
Alignment:
Q  204 ctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| ||||| ||||||||||  ||||||||| |||||||||||||  | ||  ||||||||||||||||    
T  18581790 ctcattttgatatttatgatccaacaaattgggagaatcttgataacacctcaagggatattctagttgaaa 18581719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 38698021 - 38698092
Alignment:
Q  204 ctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| ||||| ||||||||||  ||||||||| |||||||||||||  | ||  ||||||||||||||||    
T  38698021 ctcattttgatatttatgatccaacaaattgggagaatcttgataacacctcaagggatattctagttgaaa 38698092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 1178 - 1328
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaa 196  Q
    |||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||    | |||||| ||||   ||||||||||||| || ||    
T  1178 tcatgaaaatgaaaatgaagaaattgatgataattcaagtgttcctaatgatgtgccaaat---actaatattaaaaatattggtgatgattatgaacaa 1274  T
Q  197 gaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataaca 251  Q
    |||||| |||||| ||||| ||||||| || ||||||| |||||| |||||||||    
T  1275 gaaattcctcattttgatatttatgatacaagaaattgagaaaat-ttgataaca 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 2638831 - 2638681
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaa 196  Q
    |||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||    | |||||| ||||   ||||||||||||| || ||    
T  2638831 tcatgaaaatgaaaatgaagaaattgatgataattcaagtgttcctaatgatgtgccaaat---actaatattaaaaatattggtgatgattatgaacaa 2638735  T
Q  197 gaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataaca 251  Q
    |||||| |||||| ||||| ||||||| || ||||||| |||||| |||||||||    
T  2638734 gaaattcctcattttgatatttatgatacaagaaattgagaaaat-ttgataaca 2638681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 12242367 - 12242230
Alignment:
Q  117 aaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatac 216  Q
    |||||||| ||||||||||||||||||| ||| || |||||||||  |||||| |||| | |||||||||||   ||||| |||||  ||||| |||||     
T  12242367 aaattgatgataattcaagtgttcctaaagatatgtcaaatgcatataatattaaaaatcttggtgatgattgcgaaaaaaaaattcatcattttgatat 12242268  T
Q  217 ttatgatccatgaaattgggaaaatcttgataacaaat 254  Q
    | |||||| | |||  ||||| ||||||||||||||||    
T  12242267 tcatgatcaaagaatatgggagaatcttgataacaaat 12242230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 12623781 - 12623909
Alignment:
Q  73 gagccatacaaaaacttggaaaattc-----atgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaata 167  Q
    ||||| ||||||||||||||||||||     |||| ||||||||||  ||||||||| ||||||||| |||| ||||||||||  | || ||||| ||||    
T  12623781 gagccgtacaaaaacttggaaaattcggatcatgaaaatgaaaatgaggaaattgatgataattcaaatgtttctaatgatgttccgaaagcatctaata 12623880  T
Q  168 ttgaaaaacatggtgatgattattaaaaa 196  Q
    || |||| | ||||||||||||| |||||    
T  12623881 ttaaaaatcttggtgatgattatgaaaaa 12623909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 31278622 - 31278698
Alignment:
Q  197 gaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttga 273  Q
    |||||| |||||| | ||| ||||||| || |||||| ||| |||||||||||||||| ||| | || |||||||||    
T  31278622 gaaattgctcattttaatatttatgattcaagaaatttggagaatcttgataacaaatcaaagggtaatctagttga 31278698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 15679230 - 15679140
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  |||||||||||   ||||||||||    
T  15679230 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaaattttggtgatgat 15679140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 6532888 - 6533005
Alignment:
Q  136 tgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatacttatgatccatgaaattgg 235  Q
    ||||| |||| ||||| |||||||||| ||||||||||| | ||||||||||||| || ||||| || |||||| ||||| |||| ||||| |||||  |    
T  6532888 tgttcttaataatgtgtcaaatgcatctaatattgaaaatcttggtgatgattatgaacaagaagttcctcattttgatatttattatccaagaaatatg 6532987  T
Q  236 gaaaatcttgataacaaa 253  Q
     | |||||||||||||||    
T  6532988 tagaatcttgataacaaa 6533005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 12380400 - 12380491
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgatt 188  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||| ||||| ||||| |||||||||  |||||||||||   |||||||||||    
T  12380400 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgtttctaattatgtgccaaatgcatataatattgaaaattttggtgatgatt 12380491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 24912650 - 24912724
Alignment:
Q  200 atttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||||||| ||||| |||| | ||| || ||||||| |||||||||||||||| ||||||||||||||||||||    
T  24912650 atttctcattttgatatttatta-ccaagacattgggagaatcttgataacaaatcaaatgatattctagttgaaa 24912724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 15679138 - 15679063
Alignment:
Q  204 ctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaagggg 279  Q
    |||||| ||||| ||||||||||  ||||||| | |||||||||||||  | ||  ||||||||||||||||||||    
T  15679138 ctcattttgatatttatgatccaacaaattggaagaatcttgataacacctcaagggatattctagttgaaagggg 15679063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 12380490 - 12380539
Alignment:
Q  202 ttctcattctgatacttatgatccatgaaattgggaaaatcttgataaca 251  Q
    |||||||| ||||| ||||||||||  ||||||||| |||||||||||||    
T  12380490 ttctcattttgatatttatgatccaacaaattgggagaatcttgataaca 12380539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 30378041 - 30378131
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  |||||||||||   ||||||||||    
T  30378041 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaaattttggtgatgat 30378131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 1419126 - 1419036
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| ||||| |||||||||| |||||||||  |||||||||||   ||||||||||    
T  1419126 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcataatgatgtgccaaatgcatataatattgaaaattttggtgatgat 1419036  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 31516725 - 31516648
Alignment:
Q  198 aaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    ||||| |||||| | ||| |||||||||| |||||| ||| |||||||||||||||| ||  ||||||||||||||||    
T  31516725 aaattgctcattttaatatttatgatccaagaaattcggagaatcttgataacaaatcaagagatattctagttgaaa 31516648  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 2602366 - 2602515
Alignment:
Q  117 aaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatac 216  Q
    |||||||| |||||||||||||| ||||||||||  |||||||||  | ||||  ||||  ||||||||||| | ||||| ||||| || ||| | |||     
T  2602366 aaattgatgataattcaagtgtttctaatgatgtttcaaatgcatatactatt-taaaatttggtgatgattttgaaaaataaattcctaattttaatat 2602464  T
Q  217 ttatgatccatga-aattgggaaaatcttgataacaaattaaatgatattc 266  Q
    |||| ||||| || |||| ||| ||| ||||||| |||| |||||||||||    
T  2602465 ttataatccaagagaattaggacaatattgataataaatcaaatgatattc 2602515  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 15488701 - 15488623
Alignment:
Q  197 gaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| |||||| ||||| |||||||||  |||||||||| ||||||||||||| || ||  |||||| |||||||||    
T  15488701 gaaattcctcattttgatatttatgatccgagaaattgggagaatcttgataacacatcaagagatattttagttgaaa 15488623  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 1419034 - 1418963
Alignment:
Q  204 ctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| ||||| ||||||||||  ||||||||| |||||||||||||  | ||  ||||||||||||||||    
T  1419034 ctcattttgatatttatgatccaacaaattgggagaatcttgataacacctcaagggatattctagttgaaa 1418963  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 30378133 - 30378204
Alignment:
Q  204 ctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| ||||| ||||||||||  ||||||||| |||||||||||||  | ||  ||||||||||||||||    
T  30378133 ctcattttgatatttatgatccaacaaattgggagaatcttgataacacctcaagggatattctagttgaaa 30378204  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 9957752 - 9957842
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  |||||||||||   ||||||||||    
T  9957752 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaaattttggtgatgat 9957842  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 32178082 - 32178000
Alignment:
Q  105 atgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgat 187  Q
    |||||||||  ||||||||| ||||||||| |||||||||| ||||| |||||||||  |||||||||||   ||||||||||    
T  32178082 atgaaaatgaggaaattgatgataattcaaatgttcctaataatgtgccaaatgcatataatattgaaaattttggtgatgat 32178000  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 42050500 - 42050375
Alignment:
Q  97 tcatgagaatga-aaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaaaacatggtgatgattattaaaa 195  Q
    |||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||| |||||||||  | |||||||||   ||||||||||||| || |    
T  42050500 tcatgaaaatgataaatgaagaaattgttgatcattcaagtattc-taatgatgtgccaaatgcatatagtattgaaaattttggtgatgattatgaaca 42050402  T
Q  196 agaaatttctcattctgatacttatga 222  Q
    |||||||  ||||| ||||||||||||    
T  42050401 agaaattcttcattttgatacttatga 42050375  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 8360485 - 8360557
Alignment:
Q  164 aatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatacttatgatccatgaaattggg 236  Q
    |||| |||||| | ||||||||||||  ||||| |||||||||||| ||||| ||||||| || |||||||||    
T  8360485 aatagtgaaaatcttggtgatgattaagaaaaataaatttctcattgtgatatttatgatacaagaaattggg 8360557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 9957844 - 9957915
Alignment:
Q  204 ctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagttgaaa 275  Q
    |||||| ||||| ||||||||||  ||||||||| |||||||||||||  | ||  ||||||||||||||||    
T  9957844 ctcattttgatatttatgatccaacaaattgggagaatcttgataacacctcaagggatattctagttgaaa 9957915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 37314153 - 37314186
Alignment:
Q  240 atcttgataacaaattaaatgatattctagttga 273  Q
    ||||||||||||||| ||||||||||||||||||    
T  37314153 atcttgataacaaatcaaatgatattctagttga 37314186  T

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Target: scaffold0552 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 10826 - 10706
Alignment:
Q  159 catccaatattgaaaaacatggtgatgattattaaaaagaaatttctcattctgatacttatgatccatgaaattgggaaaatcttgataacaaattaaa 258  Q
    |||| ||||||||||| | |  |||||||||| || || ||||| |||||| ||||| |||| ||||| | |||||||| |||||||| ||||||| |||    
T  10826 catctaatattgaaaatcttaatgatgattatgaacaaaaaattcctcattttgatatttataatccaaggaattgggagaatcttgaaaacaaataaaa 10727  T
Q  259 tgatattctagttgaaagggg 279  Q
     |||||| |||||||||||||    
T  10726 ggatattatagttgaaagggg 10706  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 41870538 - 41870614
Alignment:
Q  97 tcatgagaatgaaaatggagaaattgattataattcaagtgttcctaatgatgtggcaaatgcatccaatattgaaa 173  Q
    |||||| ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||  ||||||||||    
T  41870538 tcatgaaaatgaaaatgaggaaattgatgataattcaaatgttcctaatgatgtgccaaatgcatataatattgaaa 41870614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 31534897 - 31534843
Alignment:
Q  217 ttatgatccatgaaattgggaaaatcttgataacaaattaaatgatattctagtt 271  Q
    |||||||||| ||| ||||| ||||||||||| ||||| ||| ||||||||||||    
T  31534897 ttatgatccaagaatttgggcaaatcttgatatcaaatcaaaggatattctagtt 31534843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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