View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_low_7 (Length: 270)
Name: NF10600_low_7
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 10456846 - 10457102
Alignment:
| Q |
1 |
tactaaaactgaacttcttggaattgtttgacatatttatctgatgtcaaaagagagatcatatttacctgcttataaacctgtatcatcagccagaatc |
100 |
Q |
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| T |
10456846 |
tactaaaactgaacttcttggaattgtttgacatatttatctgatgtcaaaagagaaatcatatttacctgctaataaacccgtatcatcagccagaatc |
10456945 |
T |
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| Q |
101 |
acaaaatggcatatctagatatttgtacaagtc-nnnnnnnnctttcttagactcccaaatagatgcacatacaccaactcaacatatacataaacaaaa |
199 |
Q |
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| T |
10456946 |
acaaaatggcatatctagatatttgtacaagtcaaaataaaacattcttagactcccaaatagatgcacatacaccaactcaacatatacattaacaaaa |
10457045 |
T |
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| Q |
200 |
gagtcgttcatcatggaggtctatcaaaagagtgac---gctgaaacttcgagtctg |
253 |
Q |
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| T |
10457046 |
tagtcgttcatcaaggaggtctatcaaaagagtgacactgctgaaacttcgagtctg |
10457102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 10466994 - 10467149
Alignment:
| Q |
75 |
ataaacctgtatcatcagccagaatc-acaaaatggcatatctagatatttgtacaagtcnnnnnnnn-ctttcttagactcccaaatagatgcacatac |
172 |
Q |
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| T |
10466994 |
ataaacctatatcatcagccagaatctaaaaaatggcatatctagat-tttgtacaactcaaaatataacattcctagactcccaaatatctgcagatac |
10467092 |
T |
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| Q |
173 |
accaactcaacatatacataaacaaaagagtcgttcatcatggaggtctatcaaaagag |
231 |
Q |
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| T |
10467093 |
accaactcaacatatacataaacaaaagc--catccatcaaggaggcctatcaaaagag |
10467149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 10512028 - 10512133
Alignment:
| Q |
151 |
actcccaaatagatgcacatacaccaactcaacatatacataaacaaaagagtcgttcatcatggaggtctatcaaaagagtgac---gctgaaacttcg |
247 |
Q |
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| T |
10512028 |
actcccaaatagtggcaaatacaccacctcaacatatacataatcaaaagagttgtccaccaaggaggcctatcaaaagagtgacattactgaaacttcg |
10512127 |
T |
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| Q |
248 |
agtctg |
253 |
Q |
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|||||| |
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| T |
10512128 |
agtctg |
10512133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 10500671 - 10500755
Alignment:
| Q |
151 |
actcccaaatagatgcacatacaccaactcaacatatacataaacaaaagagtcgttcatcatggaggtctatcaaaagagtgac |
235 |
Q |
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| T |
10500671 |
actcccaaatagttgcagatacaccaactcaacatataaataaacaaaagagccatccaccaagaaggcctaccaaaagagtgac |
10500755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 10482248 - 10482331
Alignment:
| Q |
148 |
tagactcccaaatagatgcacatacaccaactcaacatatacataaacaaaagagtcgttcatcatggaggtctatcaaaagag |
231 |
Q |
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| T |
10482248 |
tagactcccaaatagttgtagatacaccaactcaacatatacatagacaaaagagccatccatcaaggaggcctaccgaaagag |
10482331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 10444134 - 10444190
Alignment:
| Q |
73 |
ttataaacctgtatcatcagccagaatcacaaaatggcatatctagatatttgtacaa |
130 |
Q |
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| T |
10444134 |
ttataaacctgtatcatctgccagaatctcataatgacatatctagat-tttgtacaa |
10444190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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