View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_low_8 (Length: 262)
Name: NF10600_low_8
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38033479 - 38033239
Alignment:
| Q |
1 |
atactaacaaagagggttctggaaagggtccatttctgagcacgacccacgatggaaaaaggaagccagtgtgtgggaatgaatgaatggagaatcgata |
100 |
Q |
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| T |
38033479 |
atactaacaaagagggttctggaaagggtccatttctgagcacgacccacgatggaaaaaggaagccagtgtgtaggaatgaatgaatggagaatcgata |
38033380 |
T |
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| Q |
101 |
cggtggcgattcctccgattgtggacagatcttcggcggtgaaactattcattggtaagaaaaaattcagacttttttgggtagaatctgttaagggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38033379 |
cggtggcgattcctccgattgtggacagatcttcggcggtgaaactattcattggtaagaaaaaattcagacttttttgggtagaatctgttaagggaaa |
38033280 |
T |
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| Q |
201 |
gaccaattgtgaattctggatttctggtagaggattcaaaagggttgct |
249 |
Q |
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| T |
38033279 |
gaccaattgtgaatt--------ctggtagaggattcaaaagggttgct |
38033239 |
T |
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