View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10600_low_9 (Length: 250)
Name: NF10600_low_9
Description: NF10600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10600_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16578757 - 16578996
Alignment:
| Q |
1 |
tttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttacccttagacaaccagcagcaccaggagctgttgtag |
100 |
Q |
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| T |
16578757 |
tttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttacccttagacaacctgcagcaccaggagctgttgtag |
16578856 |
T |
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| Q |
101 |
cacttcatggaaggtttgatattctatcgttaaccggagcttttctaccgggacctgctcctccaggcgcaaccggactaacagtgtacttagccggtgg |
200 |
Q |
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| T |
16578857 |
cacttcatggaaggtttgatattctatcattaaccggagcttttctaccaggacctgctcctccaggcgcaaccggactcacagtgtacttagccggtgg |
16578956 |
T |
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| Q |
201 |
acaagggcaagttgttggtggaagtgttgttggacctttg |
240 |
Q |
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| T |
16578957 |
acaagggcaagttgttggtggaagtgttgttggacctttg |
16578996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 32803135 - 32802905
Alignment:
| Q |
4 |
gcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttacccttagacaaccagcagcaccaggagctgttgtagcac |
103 |
Q |
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| T |
32803135 |
gcaaggaggcgtcaacgcggtgtttgtgttctcagtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctggtgccgttgtagcac |
32803036 |
T |
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| Q |
104 |
ttcatggaaggtttgatattctatcgttaaccggagcttttctaccgggacctgctcctccaggcgcaaccggactaacagtgtacttagccggtggaca |
203 |
Q |
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| T |
32803035 |
ttcatggcaggtttgagattttgtccttaaccgggacatttctacctggtcctgctccaccaggttcaactggtcttacagtgtacctggctggaggtca |
32802936 |
T |
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| Q |
204 |
agggcaagttgttggtggaagtgttgttgga |
234 |
Q |
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| T |
32802935 |
gggccaggttgttggaggttgtgttgttgga |
32802905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 3332105 - 3332062
Alignment:
| Q |
190 |
ttagccggtggacaagggcaagttgttggtggaagtgttgttgg |
233 |
Q |
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| T |
3332105 |
ttagcgggcggacaagggcaggttgttggtggaagtgttgttgg |
3332062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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