View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_high_1 (Length: 487)
Name: NF10601_high_1
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 26402630 - 26402515
Alignment:
| Q |
18 |
aaaacactaaattcaaccaactaaatcaaactaattcaacatgacaacattcataatcataaaccaccaaactgaagacctaattttctaatccctccag |
117 |
Q |
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| T |
26402630 |
aaaacactaaattcaaccaactaaatcaaactaattcaacatgacaacattcataatcataaaccaccaaactgaagacctaattttctaatccctccag |
26402531 |
T |
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| Q |
118 |
tttccaccgctatcag |
133 |
Q |
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| T |
26402530 |
tttccaccgctatcag |
26402515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 26402229 - 26402172
Alignment:
| Q |
422 |
gggactgagcttcattcacagtaatattcctgccgtcaatatcctgaccgttcatctc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26402229 |
gggactgagcttcattcacagtaatattcctgccgtcaatatcctgaccgttcatctc |
26402172 |
T |
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