View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_1 (Length: 559)
Name: NF10601_low_1
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 88 - 545
Target Start/End: Complemental strand, 29358813 - 29358356
Alignment:
| Q |
88 |
tgaatctgacatgaattataatacaacacctaaatagaataatgagcagctatatgtgagatttggcaaaatatatcttactaaatacgtagagtaataa |
187 |
Q |
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| T |
29358813 |
tgaatctgacatgaattataatacaacacctaaatagaataatgagcagctatatgtgagatttggcaaaatatatcttactaaatacgtagagtaataa |
29358714 |
T |
|
| Q |
188 |
aaaagaaacatattgaagaggatgaatcttcaatcaaaacgggaaaatatacaatcacaggatggggagagaaaagtatgagaagaaaactcatcacgat |
287 |
Q |
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| T |
29358713 |
aaaagaaacatattgaagaggatgaatcttcaatcaaaacgggaaaatatacaatcataggatggggagagaaaactatgagaagaaaactcatcacgat |
29358614 |
T |
|
| Q |
288 |
ccaatttacaaaatattattttgattctccatttgaaagacatttaaacttgatatctctaattcataacacatatggtgtacatttaaatttgacatct |
387 |
Q |
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| T |
29358613 |
ccaatttacaaaatattattttgattctccatttgaatgacatttaaacttgatatctctaattcataacacatatggtgcacatttaaatttgacatct |
29358514 |
T |
|
| Q |
388 |
ctaaattcatagcacaaatatttggctttgaatatgtcatgctaatgcttccagcaaggacttacctatcaatcatctcaaacaatctatataaacaaga |
487 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29358513 |
ctaaattcatagcacaaatatttggctttgaatgtgtcatgctaatgcttccagcaaggacttacctatcaatcatctcaaacaatctatataaataaga |
29358414 |
T |
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| Q |
488 |
gattgttctttctgttcctcttcatcaccaccaccatgactagaaaaaaggtgaaact |
545 |
Q |
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| T |
29358413 |
gattgttctttctgttcctcttcatcaccaccaccatgactagaaaaaaggtgaaact |
29358356 |
T |
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