View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_10 (Length: 255)
Name: NF10601_low_10
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 35060810 - 35060978
Alignment:
| Q |
72 |
ggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtttggcatctggggttcc |
171 |
Q |
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| T |
35060810 |
ggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtttggtatctggggttcc |
35060909 |
T |
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| Q |
172 |
actagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaagat |
240 |
Q |
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| T |
35060910 |
actagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaagat |
35060978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 35054072 - 35054240
Alignment:
| Q |
72 |
ggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtttggcatctggggttcc |
171 |
Q |
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| T |
35054072 |
ggtgttctcaaatggagattctttcacatccttcattgggttgttttttgacacactgtggttggaattcaactttggaaagcttggtaaaaggggttcc |
35054171 |
T |
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| Q |
172 |
actagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtggaagat |
240 |
Q |
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| T |
35054172 |
tatggtggcgtttccacaatggacagatcagatgactaatgcaaagttaattgaagatgtgtggaagat |
35054240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 38169837 - 38169705
Alignment:
| Q |
107 |
ttgggttgttttttgactcattgtggttggaactcgactttggaaagtttggcatctggggttccactagtggcatttcctcaatggactgatcaaaaga |
206 |
Q |
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| T |
38169837 |
ttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaacca |
38169738 |
T |
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| Q |
207 |
ctaatgcaaaactaattgaagatgtgtggaaga |
239 |
Q |
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| T |
38169737 |
ctaatgcgaagttaattgaagatgtgtggaaga |
38169705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 38179648 - 38179519
Alignment:
| Q |
110 |
ggttgttttttgactcattgtggttggaactcgactttggaaagtttggcatctggggttccactagtggcatttcctcaatggactgatcaaaagacta |
209 |
Q |
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| T |
38179648 |
ggttgttttatgacgcattgtggatggaattcgactttggaaagtttaggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccacta |
38179549 |
T |
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| Q |
210 |
atgcaaaactaattgaagatgtgtggaaga |
239 |
Q |
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| T |
38179548 |
atgcaaagttaattgaagatgtgtggaaga |
38179519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 38184320 - 38184188
Alignment:
| Q |
107 |
ttgggttgttttttgactcattgtggttggaactcgactttggaaagtttggcatctggggttccactagtggcatttcctcaatggactgatcaaaaga |
206 |
Q |
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| T |
38184320 |
ttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggtagcatttccccagtggacagatcaaacta |
38184221 |
T |
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| Q |
207 |
ctaatgcaaaactaattgaagatgtgtggaaga |
239 |
Q |
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| T |
38184220 |
ctaatgcaaagttaattgaagatttgtggaaga |
38184188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 13670269 - 13670228
Alignment:
| Q |
110 |
ggttgttttttgactcattgtggttggaactcgactttggaa |
151 |
Q |
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| T |
13670269 |
ggttgttttgtgacacattgtggttggaactcgacgttggaa |
13670228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 13688344 - 13688385
Alignment:
| Q |
110 |
ggttgttttttgactcattgtggttggaactcgactttggaa |
151 |
Q |
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| T |
13688344 |
ggttgttttgtgacacattgtggttggaactcgacgttggaa |
13688385 |
T |
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