View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_15 (Length: 237)
Name: NF10601_low_15
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 31535216 - 31535426
Alignment:
| Q |
9 |
gatggacatcataaacggaattcagctagtgttgcccgtcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagtt |
108 |
Q |
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| T |
31535216 |
gatggacttcataaacggaattcagctagtgttgcccatcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagtt |
31535315 |
T |
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| Q |
109 |
caaaggatgcttctttatctgaggctgttgtgactcatggttcaaggcttggatggaaatggaaatcttcaagtgttcataataatgatctctgaaaatt |
208 |
Q |
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| T |
31535316 |
caaaggatgcttctttatctgaggctgttgtgactcatggttcaaggcttggatggaaatggaaatcttcaagggttcataataatgatctctgaaaatt |
31535415 |
T |
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| Q |
209 |
aggcaggacct |
219 |
Q |
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| T |
31535416 |
aggcaggacct |
31535426 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 34534359 - 34534210
Alignment:
| Q |
17 |
tcataaacggaattcagctagtgttgcccgtcctattcgtagaatatgtcagaggacgtaagcttcttcaaattctggtacagttttaagttcaaaggat |
116 |
Q |
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|||||||| || ||||||||||||||| |||||| || ||||| ||| || || || | ||||||| |||| | |||||||||||||| || | | |
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| T |
34534359 |
tcataaacagagttcagctagtgttgcgcgtcctgttagtagagtatctcgaagaacatcagcttctccaaaaaccggtacagttttaagctctgatcac |
34534260 |
T |
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| Q |
117 |
gcttctttatctgaggctgttgtgactcatggttcaaggcttggatggaa |
166 |
Q |
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| T |
34534259 |
gctccttcatctgaagctcctgtgactcctggttcaaggcttggatggaa |
34534210 |
T |
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