View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_16 (Length: 236)
Name: NF10601_low_16
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 38185703 - 38185471
Alignment:
| Q |
5 |
gttaaaaactctttcttttaaatattttctacaacacacggtcttttattgtatcaaactcacgtggatttcatcatttcatatgtgatctatttcaaac |
104 |
Q |
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| T |
38185703 |
gttaaaaactctttcttttaaatattttctacaacacacggtcttttattgtatcaaactcacgtggatttcatcatttcatatgtgatctatttcaaaa |
38185604 |
T |
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| Q |
105 |
acgtgggacacatttgagtttccataaaataatgggcgttagaaaaaataatgttaaaaagataatatccaaatcacttctataccaccaattatacat- |
203 |
Q |
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| T |
38185603 |
acgtgggacacatttgagtttccataaaataatgggcgttaaaaaaaataatgttaaaaaaataatatccaaatcacttctataccaccaattatacatg |
38185504 |
T |
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| Q |
204 |
agtaccacatagagtttggtcacctcgaacgtc |
236 |
Q |
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|||| |||||||||||||||||||| ||||||| |
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| T |
38185503 |
agtatcacatagagtttggtcacctagaacgtc |
38185471 |
T |
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