View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_18 (Length: 225)
Name: NF10601_low_18
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34689007 - 34688805
Alignment:
| Q |
1 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatctttactttaaattctttactattgactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34689007 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatcgttactttaaattctttactattgactg |
34688908 |
T |
|
| Q |
101 |
aaattcatgtgagtctttatattcaaaatgattggacttacataagcctttagagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctcc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688907 |
aaattcatgtgagtctttatattcaaaatga-----------------tttacagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctcc |
34688825 |
T |
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| Q |
201 |
acattattgttcatctcact |
220 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
34688824 |
acattattgttcatctcact |
34688805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34711419 - 34711217
Alignment:
| Q |
1 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatctttactttaaattctttactattgactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34711419 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatcgttactttaaattctttactattgactg |
34711320 |
T |
|
| Q |
101 |
aaattcatgtgagtctttatattcaaaatgattggacttacataagcctttagagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctcc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34711319 |
aaattcatgtgagtctttatattcaaaatga-----------------tttacagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctcc |
34711237 |
T |
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| Q |
201 |
acattattgttcatctcact |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
34711236 |
acattattgttcatctcact |
34711217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 16231218 - 16231045
Alignment:
| Q |
47 |
tggaatgactagtgctattaacaatctttactttaaattctttactattgactgaaattcatgtgagtctttatattcaaaatgattggacttacataag |
146 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
16231218 |
tggaatgactagtgctattaacaatctttaatttaaattctttactgttgattgaaattcatgtgagactttatattcaaaatgattgaacttacataag |
16231119 |
T |
|
| Q |
147 |
cctttagagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctccacattattgttcatctcact |
220 |
Q |
| |
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| T |
16231118 |
cctttagagggaactgtttcagtcgtgaaaatctgtccaaatgtatcaacctccacatgattgttcatttcact |
16231045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 35925285 - 35925339
Alignment:
| Q |
59 |
tgctattaacaatctttactttaaattctttactattgactgaaattcatgtgag |
113 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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|
| T |
35925285 |
tgctattaacaatctttattttgaattctttactattgactgaaattcttgtgag |
35925339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 34689833 - 34689781
Alignment:
| Q |
53 |
gactagtgctattaacaatctttactttaaattctttactattgactgaaatt |
105 |
Q |
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|
|||||||||||||||||||||| |||||| | | ||||||||||||||||||| |
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| T |
34689833 |
gactagtgctattaacaatcttaactttagactttttactattgactgaaatt |
34689781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 34712245 - 34712193
Alignment:
| Q |
53 |
gactagtgctattaacaatctttactttaaattctttactattgactgaaatt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||| | | ||||||||||||||||||| |
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|
| T |
34712245 |
gactagtgctattaacaatcttaactttagactttttactattgactgaaatt |
34712193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 35546645 - 35546720
Alignment:
| Q |
143 |
taagcctttagagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctccacattattgttcatctca |
218 |
Q |
| |
|
|||||||||||||| || ||||| | || |||||||||||||||| |||||||| ||||||| ||||| |||||| |
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| T |
35546645 |
taagcctttagaggcaaatgttttagtctagaaagtctgtccaaatctatcaaccgccacattgttgtttatctca |
35546720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 34689053 - 34689084
Alignment:
| Q |
71 |
tctttactttaaattctttactattgactgaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
34689053 |
tctttactttaaattctttactattgactgaa |
34689084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 34711465 - 34711496
Alignment:
| Q |
71 |
tctttactttaaattctttactattgactgaa |
102 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
34711465 |
tctttactttaaattctttactattgactgaa |
34711496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 34990309 - 34990350
Alignment:
| Q |
64 |
ttaacaatctttactttaaattctttactattgactgaaatt |
105 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| |
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|
| T |
34990309 |
ttaacaatctttacattaatttctttaatattgactgaaatt |
34990350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 35890990 - 35891034
Alignment:
| Q |
85 |
tctttactattgactgaaattcatgtgagtctttatattcaaaatg |
130 |
Q |
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|
|||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
35890990 |
tctttactattgactgaaattcatgtcagac-ttatattcaaaatg |
35891034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 4384237 - 4384162
Alignment:
| Q |
143 |
taagcctttagagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctccacattattgttcatctca |
218 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| |||||||||||||| ||| |||| |||||| ||||| |||||| |
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|
| T |
4384237 |
taagcctttagacggaaatgtttcagtcctggaagtctgtccaaatatattaaccgacacattgttgtttatctca |
4384162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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